Selected Publications

  • Bacterial droplet-based single-cell RNA-seq reveals antibiotic-associated heterogeneous cellular states. Cell. 2023;186(4):877-891.e14

  • GWAS of stool frequency provides insights into gastrointestinal motility and irritable bowel syndrome. Cell Genom. 2021;1(3):None

  • An integrated taxonomy for monogenic inflammatory bowel disease. Gastroenterology. 2021;162(3):859-876

  • An integrated taxonomy for monogenic inflammatory bowel disease. Gastroenterology. 2021;:ePub

  • Spatially organized multicellular immune hubs in human colorectal cancer. Cell. 2021;184(18):4734-4752.e20

  • The Human and Mouse Enteric Nervous System at Single-Cell Resolution. Cell. 2020;182(6):1606-1622.e23

  • Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis. Cell. 2019;178(3):714-730.e22

  • Strain Tracking Reveals the Determinants of Bacterial Engraftment in the Human Gut Following Fecal Microbiota Transplantation. Cell Host Microbe. 2018;23(2):229-240.e5

  • Ecology drives a global network of gene exchange connecting the human microbiome. Nature. 2011;480(7376):241-4