Selected Publications

• Discovery of disease-adapted bacterial lineages in inflammatory bowel diseases. Cell Host Microbe. 2024;32(7):1147-1162.e12

• Unraveling the diversity and functions of tissue-resident plasma cells. Nat Immunol. 2024;25(2):330-342

• Bacterial droplet-based single-cell RNA-seq reveals antibiotic-associated heterogeneous cellular states. Cell. 2023;186(4):877-891.e14

• GWAS of stool frequency provides insights into gastrointestinal motility and irritable bowel syndrome. Cell Genom. 2021;1(3):None

• An integrated taxonomy for monogenic inflammatory bowel disease. Gastroenterology. 2021;:ePub

• The Human and Mouse Enteric Nervous System at Single-Cell Resolution. Cell. 2020;182(6):1606-1622.e23

• Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis. Cell. 2019;178(3):714-730.e22

• Strain Tracking Reveals the Determinants of Bacterial Engraftment in the Human Gut Following Fecal Microbiota Transplantation. Cell Host Microbe. 2018;23(2):229-240.e5

• Ecology drives a global network of gene exchange connecting the human microbiome. Nature. 2011;480(7376):241-4