Publications for All Faculty

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Galagan JE, Nusbaum C, Roy A, Endrizzi MG, Macdonald P, FitzHugh W, Calvo S, Engels R, Smirnov S, Atnoor D, Brown A, Allen N, Naylor J, Stange-Thomann N, DeArellano K, Johnson R, Linton L, McEwan P, McKernan K, Talamas J, Tirrell A, Ye W, Zimmer A, Barber RD, Cann I, Graham DE, Grahame DA, Guss AM, Hedderich R, Ingram-Smith C, Kuettner HC, Krzycki JA, Leigh JA, Li W, Liu J, Mukhopadhyay B, Reeve JN, Smith K, Springer TA, Umayam LA, White O, White RH, Conway de Macario E, Ferry JG, Jarrell KF, Jing H, Macario AJ, Paulsen I, Pritchett M, Sowers KR, Swanson RV, Zinder SH, Lander E, Metcalf WW, Birren B

The genome of M. acetivorans reveals extensive metabolic and physiological diversity.

Genome Res. 2002;12(4):532-42 - PMID: 11932238 - PMCID: PMC187521 - DOI: 10.1101/gr.223902
Kudva IT, Evans PS, Perna NT, Barrett TJ, Ausubel FM, Blattner FR, Calderwood SB

Strains of Escherichia coli O157:H7 differ primarily by insertions or deletions, not single-nucleotide polymorphisms.

J Bacteriol. 2002;184(7):1873-9 - PMID: 11889093 - PMCID: PMC134921 - DOI: 10.1128/jb.184.7.1873-1879.2002
Drenkard E, Ausubel FM

Pseudomonas biofilm formation and antibiotic resistance are linked to phenotypic variation.

Nature. 2002;416(6882):740-3 - PMID: 11961556 - DOI: 10.1038/416740a
Fitzgerald ML, Moore KJ, Freeman MW

Nuclear hormone receptors and cholesterol trafficking: the orphans find a new home.

J Mol Med (Berl). 2002;80(5):271-81 - PMID: 12021839 - DOI: 10.1007/s00109-001-0318-y
Joung JK

Identifying and modifying protein-DNA and protein-protein interactions using a bacterial two-hybrid selection system.

J Cell Biochem Suppl. 2002;Suppl 37:53-7 - PMID: 11842428 - DOI: 10.1002/jcb.10065
Sugita H, Kaneki M, Tokunaga E, Sugita M, Koike C, Yasuhara S, Tompkins RG, Martyn JA

Inducible nitric oxide synthase plays a role in LPS-induced hyperglycemia and insulin resistance.

Am J Physiol Endocrinol Metab. 2002;282(2):E386-94 - PMID: 11788371 - DOI: 10.1152/ajpendo.00087.2001
Stuart LM, Lucas M, Simpson C, Lamb J, Savill J, Lacy-Hulbert A

Inhibitory effects of apoptotic cell ingestion upon endotoxin-driven myeloid dendritic cell maturation.

J Immunol. 2002;168(4):1627-35 - PMID: 11823490 - DOI: 10.4049/jimmunol.168.4.1627
Asai T, Tena G, Plotnikova J, Willmann MR, Chiu WL, Gomez-Gomez L, Boller T, Ausubel FM, Sheen J

MAP kinase signalling cascade in Arabidopsis innate immunity.

Nature. 2002;415(6875):977-83 - PMID: 11875555 - DOI: 10.1038/415977a
Yu YM, Ryan CM, Fei ZW, Lu XM, Castillo L, Schultz JT, Tompkins RG, Young VR

Plasma L-5-oxoproline kinetics and whole blood glutathione synthesis rates in severely burned adult humans.

Am J Physiol Endocrinol Metab. 2002;282(2):E247-58 - PMID: 11788355 - DOI: 10.1152/ajpendo.00206.2001
Aballay A, Ausubel FM

Caenorhabditis elegans as a host for the study of host-pathogen interactions.

Curr Opin Microbiol. 2002;5(1):97-101 - PMID: 11834377 - DOI: 10.1016/s1369-5274(02)00293-x
Khokhlatchev A, Rabizadeh S, Xavier R, Nedwidek M, Chen T, Zhang XF, Seed B, Avruch J

Identification of a novel Ras-regulated proapoptotic pathway.

Curr Biol. 2002;12(4):253-65 - PMID: 11864565 - DOI: 10.1016/s0960-9822(02)00683-8
Choi JY, Sifri CD, Goumnerov BC, Rahme LG, Ausubel FM, Calderwood SB

Identification of virulence genes in a pathogenic strain of Pseudomonas aeruginosa by representational difference analysis.

J Bacteriol. 2002;184(4):952-61 - PMID: 11807055 - PMCID: PMC134824 - DOI: 10.1128/jb.184.4.952-961.2002
O'Shaughnessy JA, Ljung BM, Dooley WC, Chang J, Kuerer HM, Hung DT, Grant MD, Khan SA, Phillips RF, Duvall K, Euhus DM, King BL, Anderson BO, Troyan SL, Kim J, Veronesi U, Cazzaniga M

Ductal lavage and the clinical management of women at high risk for breast carcinoma: a commentary.

Cancer. 2002;94(2):292-8 - PMID: 11900214 - DOI: 10.1002/cncr.10238
Rosen ED, Hsu CH, Wang X, Sakai S, Freeman MW, Gonzalez FJ, Spiegelman BM

C/EBPalpha induces adipogenesis through PPARgamma: a unified pathway.

Genes Dev. 2002;16(1):22-6 - PMID: 11782441 - PMCID: PMC155311 - DOI: 10.1101/gad.948702
Mizoguchi E, Mizoguchi A, Takedatsu H, Cario E, de Jong YP, Ooi CJ, Xavier RJ, Terhorst C, Podolsky DK, Bhan AK

Role of tumor necrosis factor receptor 2 (TNFR2) in colonic epithelial hyperplasia and chronic intestinal inflammation in mice.

Gastroenterology. 2002;122(1):134-44 - PMID: 11781288 - DOI: 10.1053/gast.2002.30347
Sheridan RL, Schulz JT, Ryan CM, Schnitzer JJ, Lawlor D, Driscoll DN, Donelan MB, Tompkins RG

Long-term consequences of toxic epidermal necrolysis in children.

Pediatrics. 2002;109(1):74-8 - PMID: 11773544 - DOI: 10.1542/peds.109.1.74
Bernheiden M, Heinrich JM, Minigo G, Schütt C, Stelter F, Freeman M, Golenbock D, Jack RS

LBP, CD14, TLR4 and the murine innate immune response to a peritoneal Salmonella infection.

J Endotoxin Res. 2001;7(6):447-50 - PMID: 11753215
Lee RY, Hench J, Ruvkun G

Regulation of C. elegans DAF-16 and its human ortholog FKHRL1 by the daf-2 insulin-like signaling pathway.

Curr Biol. 2001;11(24):1950-7 - PMID: 11747821 - DOI: 10.1016/s0960-9822(01)00595-4
Yang Y, Kuang Y, Montes De Oca R, Hays T, Moreau L, Lu N, Seed B, D'Andrea AD

Targeted disruption of the murine Fanconi anemia gene, Fancg/Xrcc9.

Blood. 2001;98(12):3435-40 - PMID: 11719385 - DOI: 10.1182/blood.v98.12.3435
Sheen J

Signal transduction in maize and Arabidopsis mesophyll protoplasts.

Plant Physiol. 2001;127(4):1466-75 - PMID: 11743090 - PMCID: PMC1540179
Hendrickson EL, Plotnikova J, Mahajan-Miklos S, Rahme LG, Ausubel FM

Differential roles of the Pseudomonas aeruginosa PA14 rpoN gene in pathogenicity in plants, nematodes, insects, and mice.

J Bacteriol. 2001;183(24):7126-34 - PMID: 11717271 - PMCID: PMC95561 - DOI: 10.1128/JB.183.24.7126-7134.2001
Washizu J, Berthiaume F, Mokuno Y, Tompkins RG, Toner M, Yarmush ML

Long-term maintenance of cytochrome P450 activities by rat hepatocyte/3T3 cell co-cultures in heparinized human plasma.

Tissue Eng. 2001;7(6):691-703 - PMID: 11749727 - DOI: 10.1089/107632701753337654
Keefe AD, Wilson DS, Seelig B, Szostak JW

One-step purification of recombinant proteins using a nanomolar-affinity streptavidin-binding peptide, the SBP-Tag.

Protein Expr Purif. 2001;23(3):440-6 - PMID: 11722181 - DOI: 10.1006/prep.2001.1515
Tompkins RG

The American Burn Association in the New Millennium.

J Burn Care Rehabil. 2001;22(6):369-374 - PMID: 11773770 - DOI: 10.1097/00004630-200111000-00004
Finch CE, Ruvkun G

The genetics of aging.

Annu Rev Genomics Hum Genet. 2001;2:435-62 - PMID: 11701657 - DOI: 10.1146/annurev.genom.2.1.435
Total: 2481