Publications for All Faculty

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Brown E, McKee T, diTomaso E, Pluen A, Seed B, Boucher Y, Jain RK

Dynamic imaging of collagen and its modulation in tumors in vivo using second-harmonic generation.
Nat Med. 2003;9(6):796-800 - PMID: 12754503 - DOI: 10.1038/nm879

Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J

Computational and experimental identification of C. elegans microRNAs.
Mol Cell. 2003;11(5):1253-63 - PMID: 12769849 - DOI: 10.1016/s1097-2765(03)00153-9

Wang X, Seed B

Selection of oligonucleotide probes for protein coding sequences.
Bioinformatics. 2003;19(7):796-802 - PMID: 12724288 - DOI: 10.1093/bioinformatics/btg086

Miyata S, Casey M, Frank DW, Ausubel FM, Drenkard E

Use of the Galleria mellonella caterpillar as a model host to study the role of the type III secretion system in Pseudomonas aeruginosa pathogenesis.
Infect Immun. 2003;71(5):2404-13 - PMID: 12704110 - PMCID: PMC153283 - DOI: 10.1128/iai.71.5.2404-2413.2003

Shito M, Tilles AW, Tompkins RG, Yarmush ML, Toner M

Efficacy of an extracorporeal flat-plate bioartificial liver in treating fulminant hepatic failure.
J Surg Res. 2003;111(1):53-62 - PMID: 12842448 - DOI: 10.1016/s0022-4804(03)00048-9

Lee SS, Kennedy S, Tolonen AC, Ruvkun G

DAF-16 target genes that control C. elegans life-span and metabolism.
Science. 2003;300(5619):644-7 - PMID: 12690206 - DOI: 10.1126/science.1083614

Moore B, Zhou L, Rolland F, Hall Q, Cheng WH, Liu YX, Hwang I, Jones T, Sheen J

Role of the Arabidopsis glucose sensor HXK1 in nutrient, light, and hormonal signaling.
Science. 2003;300(5617):332-6 - PMID: 12690200 - DOI: 10.1126/science.1080585

Galagan JE, Calvo SE, Borkovich KA, Selker EU, Read ND, Jaffe D, FitzHugh W, Ma LJ, Smirnov S, Purcell S, Rehman B, Elkins T, Engels R, Wang S, Nielsen CB, Butler J, Endrizzi M, Qui D, Ianakiev P, Bell-Pedersen D, Nelson MA, Werner-Washburne M, Selitrennikoff CP, Kinsey JA, Braun EL, Zelter A, Schulte U, Kothe GO, Jedd G, Mewes W, Staben C, Marcotte E, Greenberg D, Roy A, Foley K, Naylor J, Stange-Thomann N, Barrett R, Gnerre S, Kamal M, Kamvysselis M, Mauceli E, Bielke C, Rudd S, Frishman D, Krystofova S, Rasmussen C, Metzenberg RL, Perkins DD, Kroken S, Cogoni C, Macino G, Catcheside D, Li W, Pratt RJ, Osmani SA, DeSouza CP, Glass L, Orbach MJ, Berglund JA, Voelker R, Yarden O, Plamann M, Seiler S, Dunlap J, Radford A, Aramayo R, Natvig DO, Alex LA, Mannhaupt G, Ebbole DJ, Freitag M, Paulsen I, Sachs MS, Lander ES, Nusbaum C, Birren B

The genome sequence of the filamentous fungus Neurospora crassa.
Nature. 2003;422(6934):859-68 - PMID: 12712197 - DOI: 10.1038/nature01554

Huang Z, Szostak JW

Selective labeling and detection of specific RNAs in an RNA mixture.
Anal Biochem. 2003;315(1):129-33 - PMID: 12672421 - DOI: 10.1016/s0003-2697(02)00701-7

Sifri CD, Begun J, Ausubel FM, Calderwood SB

Caenorhabditis elegans as a model host for Staphylococcus aureus pathogenesis.
Infect Immun. 2003;71(4):2208-17 - PMID: 12654843 - PMCID: PMC152095 - DOI: 10.1128/iai.71.4.2208-2217.2003

Tilles AW, Berthiaume F, Yarmush ML, Tompkins RG, Toner M

Bioengineering of liver assist devices.
J Hepatobiliary Pancreat Surg. 2003;9(6):686-96 - PMID: 12658402 - DOI: 10.1007/s005340200095

Li W, Kennedy SG, Ruvkun G

daf-28 encodes a C. elegans insulin superfamily member that is regulated by environmental cues and acts in the DAF-2 signaling pathway.
Genes Dev. 2003;17(7):844-58 - PMID: 12654727 - PMCID: PMC196030 - DOI: 10.1101/gad.1066503

Yang Y, Seed B

Site-specific gene targeting in mouse embryonic stem cells with intact bacterial artificial chromosomes.
Nat Biotechnol. 2003;21(4):447-51 - PMID: 12627171 - DOI: 10.1038/nbt803

León P, Sheen J

Sugar and hormone connections.
Trends Plant Sci. 2003;8(3):110-6 - PMID: 12663220 - DOI: 10.1016/S1360-1385(03)00011-6

Ambros V, Bartel B, Bartel DP, Burge CB, Carrington JC, Chen X, Dreyfuss G, Eddy SR, Griffiths-Jones S, Marshall M, Matzke M, Ruvkun G, Tuschl T

A uniform system for microRNA annotation.
RNA. 2003;9(3):277-9 - PMID: 12592000 - PMCID: PMC1370393 - DOI: 10.1261/rna.2183803

Xu Y, Stange-Thomann N, Weber G, Bo R, Dodge S, David RG, Foley K, Beheshti J, Harris NL, Birren B, Lander ES, Meyerson M

Pathogen discovery from human tissue by sequence-based computational subtraction.
Genomics. 2003;81(3):329-35 - PMID: 12659816 - DOI: 10.1016/s0888-7543(02)00043-5

Alonso JM, Stepanova AN, Solano R, Wisman E, Ferrari S, Ausubel FM, Ecker JR

Five components of the ethylene-response pathway identified in a screen for weak ethylene-insensitive mutants in Arabidopsis.
Proc Natl Acad Sci U S A. 2003;100(5):2992-7 - PMID: 12606727 - PMCID: PMC151454 - DOI: 10.1073/pnas.0438070100

Coleman FT, Mueschenborn S, Meluleni G, Ray C, Carey VJ, Vargas SO, Cannon CL, Ausubel FM, Pier GB

Hypersusceptibility of cystic fibrosis mice to chronic Pseudomonas aeruginosa oropharyngeal colonization and lung infection.
Proc Natl Acad Sci U S A. 2003;100(4):1949-54 - PMID: 12578988 - PMCID: PMC149939 - DOI: 10.1073/pnas.0437901100

Swat W, Xavier R, Mizoguchi A, Mizoguchi E, Fredericks J, Fujikawa K, Bhan AK, Alt FW

Essential role for Vav1 in activation, but not development, of gammadelta T cells.
Int Immunol. 2003;15(2):215-21 - PMID: 12578851 - DOI: 10.1093/intimm/dxg021

Beck PL, Rosenberg IM, Xavier RJ, Koh T, Wong JF, Podolsky DK

Transforming growth factor-beta mediates intestinal healing and susceptibility to injury in vitro and in vivo through epithelial cells.
Am J Pathol. 2003;162(2):597-608 - PMID: 12547717 - PMCID: PMC1851153 - DOI: 10.1016/s0002-9440(10)63853-9

Freeman MW, Moore KJ

eLiXiRs for restraining inflammation.
Nat Med. 2003;9(2):168-9 - PMID: 12563335 - DOI: 10.1038/nm0203-168

Afting M, Stock UA, Nasseri B, Pomerantseva I, Seed B, Vacanti JP

Efficient and stable retroviral transfection of ovine endothelial cells with green fluorescent protein for cardiovascular tissue engineering.
Tissue Eng. 2003;9(1):137-41 - PMID: 12625962 - DOI: 10.1089/107632703762687618

Aballay A, Drenkard E, Hilbun LR, Ausubel FM

Caenorhabditis elegans innate immune response triggered by Salmonella enterica requires intact LPS and is mediated by a MAPK signaling pathway.
Curr Biol. 2003;13(1):47-52 - PMID: 12526744 - DOI: 10.1016/s0960-9822(02)01396-9

Ashrafi K, Chang FY, Watts JL, Fraser AG, Kamath RS, Ahringer J, Ruvkun G

Genome-wide RNAi analysis of Caenorhabditis elegans fat regulatory genes.
Nature. 2003;421(6920):268-72 - PMID: 12529643 - DOI: 10.1038/nature01279

Chaput JC, Ichida JK, Szostak JW

DNA polymerase-mediated DNA synthesis on a TNA template.
J Am Chem Soc. 2003;125(4):856-7 - PMID: 12537469 - DOI: 10.1021/ja028589k
Total: 2489