Publications for All Faculty

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Beck PL, Xavier R, Wong J, Ezedi I, Mashimo H, Mizoguchi A, Mizoguchi E, Bhan AK, Podolsky DK

Paradoxical roles of different nitric oxide synthase isoforms in colonic injury.

Am J Physiol Gastrointest Liver Physiol. 2004;286(1):G137-47 - PMID: 14665440 - DOI: 10.1152/ajpgi.00309.2003
Luftig M, Yasui T, Soni V, Kang MS, Jacobson N, Cahir-McFarland E, Seed B, Kieff E

Epstein-Barr virus latent infection membrane protein 1 TRAF-binding site induces NIK/IKK alpha-dependent noncanonical NF-kappaB activation.

Proc Natl Acad Sci U S A. 2004;101(1):141-6 - PMID: 14691250 - PMCID: PMC314152 - DOI: 10.1073/pnas.2237183100
Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G

Identification of many microRNAs that copurify with polyribosomes in mammalian neurons.

Proc Natl Acad Sci U S A. 2004;101(1):360-5 - PMID: 14691248 - PMCID: PMC314190 - DOI: 10.1073/pnas.2333854100
Thibodeau SA, Joung JK

An improved strategy for constructing "designer" Cys2His2 zinc finger proteins.

Discov Med. 2003;3(19):32-5 - PMID: 20705034
Wang X, Seed B

A PCR primer bank for quantitative gene expression analysis.

Nucleic Acids Res. 2003;31(24):e154 - PMID: 14654707 - PMCID: PMC291882 - DOI: 10.1093/nar/gng154
Komaroff AL, Ruvkun G

Unraveling the secrets of the cell.

Newsweek. 2003;142(23):96 - PMID: 14712576
Huang Z, Szostak JW

Evolution of aptamers with a new specificity and new secondary structures from an ATP aptamer.

RNA. 2003;9(12):1456-63 - PMID: 14624002 - PMCID: PMC1370500 - DOI: 10.1261/rna.5990203
Ishiguro K, Xavier R

Homer-3 regulates activation of serum response element in T cells via its EVH1 domain.

Blood. 2004;103(6):2248-56 - PMID: 14645007 - DOI: 10.1182/blood-2003-08-2671
Fitzgerald ML, Morris AL, Chroni A, Mendez AJ, Zannis VI, Freeman MW

ABCA1 and amphipathic apolipoproteins form high-affinity molecular complexes required for cholesterol efflux.

J Lipid Res. 2004;45(2):287-94 - PMID: 14617740 - DOI: 10.1194/jlr.M300355-JLR200
Hurt JA, Thibodeau SA, Hirsh AS, Pabo CO, Joung JK

Highly specific zinc finger proteins obtained by directed domain shuffling and cell-based selection.

Proc Natl Acad Sci U S A. 2003;100(21):12271-6 - PMID: 14527993 - PMCID: PMC218748 - DOI: 10.1073/pnas.2135381100
Chen CL, Fei Z, Carter EA, Lu XM, Hu RH, Young VR, Tompkins RG, Yu YM

Metabolic fate of extrahepatic arginine in liver after burn injury.

Metabolism. 2003;52(10):1232-9 - PMID: 14564672 - DOI: 10.1016/s0026-0495(03)00282-8
Hanczyc MM, Fujikawa SM, Szostak JW

Experimental models of primitive cellular compartments: encapsulation, growth, and division.

Science. 2003;302(5645):618-22 - PMID: 14576428 - PMCID: PMC4484575 - DOI: 10.1126/science.1089904
Pawlik TM, Carter EA, Bode BP, Fischman AJ, Tompkins RG

Central role of interleukin-6 in burn induced stimulation of hepatic amino acid transport.

Int J Mol Med. 2003;12(4):541-8 - PMID: 12964032
Yanagisawa S, Yoo SD, Sheen J

Differential regulation of EIN3 stability by glucose and ethylene signalling in plants.

Nature. 2003;425(6957):521-5 - PMID: 14523448 - DOI: 10.1038/nature01984
Kim WS, Ordija CM, Freeman MW

Activation of signaling pathways by putative scavenger receptor class A (SR-A) ligands requires CD14 but not SR-A.

Biochem Biophys Res Commun. 2003;310(2):542-9 - PMID: 14521944 - DOI: 10.1016/j.bbrc.2003.09.049
Lichtenthaler SF, Dominguez DI, Westmeyer GG, Reiss K, Haass C, Saftig P, De Strooper B, Seed B

The cell adhesion protein P-selectin glycoprotein ligand-1 is a substrate for the aspartyl protease BACE1.

J Biol Chem. 2003;278(49):48713-9 - PMID: 14507929 - DOI: 10.1074/jbc.M303861200
Lucas M, Stuart LM, Savill J, Lacy-Hulbert A

Apoptotic cells and innate immune stimuli combine to regulate macrophage cytokine secretion.

J Immunol. 2003;171(5):2610-5 - PMID: 12928413 - DOI: 10.4049/jimmunol.171.5.2610
Ruvinsky I, Ruvkun G

Functional tests of enhancer conservation between distantly related species.

Development. 2003;130(21):5133-42 - PMID: 12944426 - DOI: 10.1242/dev.00711
Aspöck G, Ruvkun G, Bürglin TR

The Caenorhabditis elegans ems class homeobox gene ceh-2 is required for M3 pharynx motoneuron function.

Development. 2003;130(15):3369-78 - PMID: 12810585 - DOI: 10.1242/dev.00551
Chaput JC, Szostak JW

TNA synthesis by DNA polymerases.

J Am Chem Soc. 2003;125(31):9274-5 - PMID: 12889939 - DOI: 10.1021/ja035917n
Sze JY, Ruvkun G

Activity of the Caenorhabditis elegans UNC-86 POU transcription factor modulates olfactory sensitivity.

Proc Natl Acad Sci U S A. 2003;100(16):9560-5 - PMID: 12883006 - PMCID: PMC170957 - DOI: 10.1073/pnas.1530752100
Lutfalla G, Roest Crollius H, Stange-Thomann N, Jaillon O, Mogensen K, Monneron D

Comparative genomic analysis reveals independent expansion of a lineage-specific gene family in vertebrates: the class II cytokine receptors and their ligands in mammals and fish.

BMC Genomics. 2003;4(1):29 - PMID: 12869211 - PMCID: PMC179897 - DOI: 10.1186/1471-2164-4-29
Bashirullah A, Pasquinelli AE, Kiger AA, Perrimon N, Ruvkun G, Thummel CS

Coordinate regulation of small temporal RNAs at the onset of Drosophila metamorphosis.

Dev Biol. 2003;259(1):1-8 - PMID: 12812783 - DOI: 10.1016/s0012-1606(03)00063-0
Lau GW, Goumnerov BC, Walendziewicz CL, Hewitson J, Xiao W, Mahajan-Miklos S, Tompkins RG, Perkins LA, Rahme LG

The Drosophila melanogaster toll pathway participates in resistance to infection by the gram-negative human pathogen Pseudomonas aeruginosa.

Infect Immun. 2003;71(7):4059-66 - PMID: 12819096 - PMCID: PMC162001 - DOI: 10.1128/iai.71.7.4059-4066.2003
Mizoguchi E, Xavier RJ, Reinecker HC, Uchino H, Bhan AK, Podolsky DK, Mizoguchi A

Colonic epithelial functional phenotype varies with type and phase of experimental colitis.

Gastroenterology. 2003;125(1):148-61 - PMID: 12851880 - DOI: 10.1016/s0016-5085(03)00665-6
Total: 2473