Publications for All Faculty

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Tewari M, Hu PJ, Ahn JS, Ayivi-Guedehoussou N, Vidalain PO, Li S, Milstein S, Armstrong CM, Boxem M, Butler MD, Busiguina S, Rual JF, Ibarrola N, Chaklos ST, Bertin N, Vaglio P, Edgley ML, King KV, Albert PS, Vandenhaute J, Pandey A, Riddle DL, Ruvkun G, Vidal M

Systematic interactome mapping and genetic perturbation analysis of a C. elegans TGF-beta signaling network.

Mol Cell. 2004;13(4):469-82 - PMID: 14992718 - DOI: 10.1016/s1097-2765(04)00033-4
Kennedy S, Wang D, Ruvkun G

A conserved siRNA-degrading RNase negatively regulates RNA interference in C. elegans.

Nature. 2004;427(6975):645-9 - PMID: 14961122 - DOI: 10.1038/nature02302
Chroni A, Liu T, Fitzgerald ML, Freeman MW, Zannis VI

Cross-linking and lipid efflux properties of apoA-I mutants suggest direct association between apoA-I helices and ABCA1.

Biochemistry. 2004;43(7):2126-39 - PMID: 14967052 - DOI: 10.1021/bi035813p
Mokuno Y, Berthiaume F, Tompkins RG, Balis UJ, Yarmush ML

Technique for expanding the donor liver pool: heat shock preconditioning in a rat fatty liver model.

Liver Transpl. 2004;10(2):264-72 - PMID: 14762865 - DOI: 10.1002/lt.20014
Shen Y, Jacobs JM, Camp DG, Fang R, Moore RJ, Smith RD, Xiao W, Davis RW, Tompkins RG

Ultra-high-efficiency strong cation exchange LC/RPLC/MS/MS for high dynamic range characterization of the human plasma proteome.

Anal Chem. 2004;76(4):1134-44 - PMID: 14961748 - DOI: 10.1021/ac034869m
Sheridan RL, Tompkins RG

What's new in burns and metabolism.

J Am Coll Surg. 2004;198(2):243-63 - PMID: 14759783 - DOI: 10.1016/j.jamcollsurg.2003.11.007
Déziel E, Lépine F, Milot S, He J, Mindrinos MN, Tompkins RG, Rahme LG

Analysis of Pseudomonas aeruginosa 4-hydroxy-2-alkylquinolines (HAQs) reveals a role for 4-hydroxy-2-heptylquinoline in cell-to-cell communication.

Proc Natl Acad Sci U S A. 2004;101(5):1339-44 - PMID: 14739337 - PMCID: PMC337054 - DOI: 10.1073/pnas.0307694100
Ruvkun G, Wightman B, Ha I

The 20 years it took to recognize the importance of tiny RNAs.

Cell. 2004;116(2 Suppl):S93-6, 2 p following S96 - PMID: 15055593 - DOI: 10.1016/s0092-8674(04)00034-0
Beck PL, Xavier R, Wong J, Ezedi I, Mashimo H, Mizoguchi A, Mizoguchi E, Bhan AK, Podolsky DK

Paradoxical roles of different nitric oxide synthase isoforms in colonic injury.

Am J Physiol Gastrointest Liver Physiol. 2004;286(1):G137-47 - PMID: 14665440 - DOI: 10.1152/ajpgi.00309.2003
Luftig M, Yasui T, Soni V, Kang MS, Jacobson N, Cahir-McFarland E, Seed B, Kieff E

Epstein-Barr virus latent infection membrane protein 1 TRAF-binding site induces NIK/IKK alpha-dependent noncanonical NF-kappaB activation.

Proc Natl Acad Sci U S A. 2004;101(1):141-6 - PMID: 14691250 - PMCID: PMC314152 - DOI: 10.1073/pnas.2237183100
Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G

Identification of many microRNAs that copurify with polyribosomes in mammalian neurons.

Proc Natl Acad Sci U S A. 2004;101(1):360-5 - PMID: 14691248 - PMCID: PMC314190 - DOI: 10.1073/pnas.2333854100
Thibodeau SA, Joung JK

An improved strategy for constructing "designer" Cys2His2 zinc finger proteins.

Discov Med. 2003;3(19):32-5 - PMID: 20705034
Wang X, Seed B

A PCR primer bank for quantitative gene expression analysis.

Nucleic Acids Res. 2003;31(24):e154 - PMID: 14654707 - PMCID: PMC291882 - DOI: 10.1093/nar/gng154
Komaroff AL, Ruvkun G

Unraveling the secrets of the cell.

Newsweek. 2003;142(23):96 - PMID: 14712576
Huang Z, Szostak JW

Evolution of aptamers with a new specificity and new secondary structures from an ATP aptamer.

RNA. 2003;9(12):1456-63 - PMID: 14624002 - PMCID: PMC1370500 - DOI: 10.1261/rna.5990203
Ishiguro K, Xavier R

Homer-3 regulates activation of serum response element in T cells via its EVH1 domain.

Blood. 2004;103(6):2248-56 - PMID: 14645007 - DOI: 10.1182/blood-2003-08-2671
Fitzgerald ML, Morris AL, Chroni A, Mendez AJ, Zannis VI, Freeman MW

ABCA1 and amphipathic apolipoproteins form high-affinity molecular complexes required for cholesterol efflux.

J Lipid Res. 2004;45(2):287-94 - PMID: 14617740 - DOI: 10.1194/jlr.M300355-JLR200
Hurt JA, Thibodeau SA, Hirsh AS, Pabo CO, Joung JK

Highly specific zinc finger proteins obtained by directed domain shuffling and cell-based selection.

Proc Natl Acad Sci U S A. 2003;100(21):12271-6 - PMID: 14527993 - PMCID: PMC218748 - DOI: 10.1073/pnas.2135381100
Chen CL, Fei Z, Carter EA, Lu XM, Hu RH, Young VR, Tompkins RG, Yu YM

Metabolic fate of extrahepatic arginine in liver after burn injury.

Metabolism. 2003;52(10):1232-9 - PMID: 14564672 - DOI: 10.1016/s0026-0495(03)00282-8
Hanczyc MM, Fujikawa SM, Szostak JW

Experimental models of primitive cellular compartments: encapsulation, growth, and division.

Science. 2003;302(5645):618-22 - PMID: 14576428 - PMCID: PMC4484575 - DOI: 10.1126/science.1089904
Pawlik TM, Carter EA, Bode BP, Fischman AJ, Tompkins RG

Central role of interleukin-6 in burn induced stimulation of hepatic amino acid transport.

Int J Mol Med. 2003;12(4):541-8 - PMID: 12964032
Yanagisawa S, Yoo SD, Sheen J

Differential regulation of EIN3 stability by glucose and ethylene signalling in plants.

Nature. 2003;425(6957):521-5 - PMID: 14523448 - DOI: 10.1038/nature01984
Kim WS, Ordija CM, Freeman MW

Activation of signaling pathways by putative scavenger receptor class A (SR-A) ligands requires CD14 but not SR-A.

Biochem Biophys Res Commun. 2003;310(2):542-9 - PMID: 14521944 - DOI: 10.1016/j.bbrc.2003.09.049
Lichtenthaler SF, Dominguez DI, Westmeyer GG, Reiss K, Haass C, Saftig P, De Strooper B, Seed B

The cell adhesion protein P-selectin glycoprotein ligand-1 is a substrate for the aspartyl protease BACE1.

J Biol Chem. 2003;278(49):48713-9 - PMID: 14507929 - DOI: 10.1074/jbc.M303861200
Lucas M, Stuart LM, Savill J, Lacy-Hulbert A

Apoptotic cells and innate immune stimuli combine to regulate macrophage cytokine secretion.

J Immunol. 2003;171(5):2610-5 - PMID: 12928413 - DOI: 10.4049/jimmunol.171.5.2610
Total: 2481