Publications for All Faculty

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Tenor JL, McCormick BA, Ausubel FM, Aballay A

Caenorhabditis elegans-based screen identifies Salmonella virulence factors required for conserved host-pathogen interactions.

Curr Biol. 2004;14(11):1018-24 - PMID: 15182677 - DOI: 10.1016/j.cub.2004.05.050
Engelbert M, Mylonakis E, Ausubel FM, Calderwood SB, Gilmore MS

Contribution of gelatinase, serine protease, and fsr to the pathogenesis of Enterococcus faecalis endophthalmitis.

Infect Immun. 2004;72(6):3628-33 - PMID: 15155673 - PMCID: PMC415677 - DOI: 10.1128/IAI.72.6.3628-3633.2004
Sheridan RL, Prelack K, Yu YM, Lydon M, Petras L, Young VR, Tompkins RG

Short-term enteral glutamine does not enhance protein accretion in burned children: a stable isotope study.

Surgery. 2004;135(6):671-8 - PMID: 15179374 - DOI: 10.1016/j.surg.2003.11.014
Chaput JC, Szostak JW

Evolutionary optimization of a nonbiological ATP binding protein for improved folding stability.

Chem Biol. 2004;11(6):865-74 - PMID: 15217619 - DOI: 10.1016/j.chembiol.2004.04.006
Chen IA, Szostak JW

Membrane growth can generate a transmembrane pH gradient in fatty acid vesicles.

Proc Natl Acad Sci U S A. 2004;101(21):7965-70 - PMID: 15148394 - PMCID: PMC419540 - DOI: 10.1073/pnas.0308045101
Sugimachi K, Sosef MN, Baust JM, Fowler A, Tompkins RG, Toner M

Long-term function of cryopreserved rat hepatocytes in a coculture system.

Cell Transplant. 2004;13(2):187-95 - PMID: 15129765 - DOI: 10.3727/000000004773301799
Mizuno T, Hisamoto N, Terada T, Kondo T, Adachi M, Nishida E, Kim DH, Ausubel FM, Matsumoto K

The Caenorhabditis elegans MAPK phosphatase VHP-1 mediates a novel JNK-like signaling pathway in stress response.

EMBO J. 2004;23(11):2226-34 - PMID: 15116070 - PMCID: PMC419906 - DOI: 10.1038/sj.emboj.7600226
Rabizadeh S, Xavier RJ, Ishiguro K, Bernabeortiz J, Lopez-Ilasaca M, Khokhlatchev A, Mollahan P, Pfeifer GP, Avruch J, Seed B

The scaffold protein CNK1 interacts with the tumor suppressor RASSF1A and augments RASSF1A-induced cell death.

J Biol Chem. 2004;279(28):29247-54 - PMID: 15075335 - DOI: 10.1074/jbc.M401699200
Nguyen-Hackley DH, Ramm E, Taylor CM, Joung JK, Dervan PB, Pabo CO

Allosteric inhibition of zinc-finger binding in the major groove of DNA by minor-groove binding ligands.

Biochemistry. 2004;43(13):3880-90 - PMID: 15049695 - DOI: 10.1021/bi030223c
Apidianakis Y, Rahme LG, Heitman J, Ausubel FM, Calderwood SB, Mylonakis E

Challenge of Drosophila melanogaster with Cryptococcus neoformans and role of the innate immune response.

Eukaryot Cell. 2004;3(2):413-9 - PMID: 15075271 - PMCID: PMC387633 - DOI: 10.1128/ec.3.2.413-419.2004
Liberati NT, Fitzgerald KA, Kim DH, Feinbaum R, Golenbock DT, Ausubel FM

Requirement for a conserved Toll/interleukin-1 resistance domain protein in the Caenorhabditis elegans immune response.

Proc Natl Acad Sci U S A. 2004;101(17):6593-8 - PMID: 15123841 - PMCID: PMC404090 - DOI: 10.1073/pnas.0308625101
Carothers JM, Oestreich SC, Davis JH, Szostak JW

Informational complexity and functional activity of RNA structures.

J Am Chem Soc. 2004;126(16):5130-7 - PMID: 15099096 - PMCID: PMC5042360 - DOI: 10.1021/ja031504a
Mak HY, Ruvkun G

Intercellular signaling of reproductive development by the C. elegans DAF-9 cytochrome P450.

Development. 2004;131(8):1777-86 - PMID: 15084462 - DOI: 10.1242/dev.01069
Björkbacka H, Kunjathoor VV, Moore KJ, Koehn S, Ordija CM, Lee MA, Means T, Halmen K, Luster AD, Golenbock DT, Freeman MW

Reduced atherosclerosis in MyD88-null mice links elevated serum cholesterol levels to activation of innate immunity signaling pathways.

Nat Med. 2004;10(4):416-21 - PMID: 15034566 - DOI: 10.1038/nm1008
Thibodeau SA, Fang R, Joung JK

High-throughput beta-galactosidase assay for bacterial cell-based reporter systems.

Biotechniques. 2004;36(3):410-5 - PMID: 15038156 - DOI: 10.2144/04363BM07
Beck PL, Wong JF, Li Y, Swaminathan S, Xavier RJ, Devaney KL, Podolsky DK

Chemotherapy- and radiotherapy-induced intestinal damage is regulated by intestinal trefoil factor.

Gastroenterology. 2004;126(3):796-808 - PMID: 14988834 - DOI: 10.1053/j.gastro.2003.12.004
Shou H, Bordallo P, Fan JB, Yeakley JM, Bibikova M, Sheen J, Wang K

Expression of an active tobacco mitogen-activated protein kinase kinase kinase enhances freezing tolerance in transgenic maize.

Proc Natl Acad Sci U S A. 2004;101(9):3298-303 - PMID: 14960727 - PMCID: PMC365784 - DOI: 10.1073/pnas.0308095100
Tewari M, Hu PJ, Ahn JS, Ayivi-Guedehoussou N, Vidalain PO, Li S, Milstein S, Armstrong CM, Boxem M, Butler MD, Busiguina S, Rual JF, Ibarrola N, Chaklos ST, Bertin N, Vaglio P, Edgley ML, King KV, Albert PS, Vandenhaute J, Pandey A, Riddle DL, Ruvkun G, Vidal M

Systematic interactome mapping and genetic perturbation analysis of a C. elegans TGF-beta signaling network.

Mol Cell. 2004;13(4):469-82 - PMID: 14992718 - DOI: 10.1016/s1097-2765(04)00033-4
Kennedy S, Wang D, Ruvkun G

A conserved siRNA-degrading RNase negatively regulates RNA interference in C. elegans.

Nature. 2004;427(6975):645-9 - PMID: 14961122 - DOI: 10.1038/nature02302
Chroni A, Liu T, Fitzgerald ML, Freeman MW, Zannis VI

Cross-linking and lipid efflux properties of apoA-I mutants suggest direct association between apoA-I helices and ABCA1.

Biochemistry. 2004;43(7):2126-39 - PMID: 14967052 - DOI: 10.1021/bi035813p
Mokuno Y, Berthiaume F, Tompkins RG, Balis UJ, Yarmush ML

Technique for expanding the donor liver pool: heat shock preconditioning in a rat fatty liver model.

Liver Transpl. 2004;10(2):264-72 - PMID: 14762865 - DOI: 10.1002/lt.20014
Shen Y, Jacobs JM, Camp DG, Fang R, Moore RJ, Smith RD, Xiao W, Davis RW, Tompkins RG

Ultra-high-efficiency strong cation exchange LC/RPLC/MS/MS for high dynamic range characterization of the human plasma proteome.

Anal Chem. 2004;76(4):1134-44 - PMID: 14961748 - DOI: 10.1021/ac034869m
Sheridan RL, Tompkins RG

What's new in burns and metabolism.

J Am Coll Surg. 2004;198(2):243-63 - PMID: 14759783 - DOI: 10.1016/j.jamcollsurg.2003.11.007
Déziel E, Lépine F, Milot S, He J, Mindrinos MN, Tompkins RG, Rahme LG

Analysis of Pseudomonas aeruginosa 4-hydroxy-2-alkylquinolines (HAQs) reveals a role for 4-hydroxy-2-heptylquinoline in cell-to-cell communication.

Proc Natl Acad Sci U S A. 2004;101(5):1339-44 - PMID: 14739337 - PMCID: PMC337054 - DOI: 10.1073/pnas.0307694100
Ruvkun G, Wightman B, Ha I

The 20 years it took to recognize the importance of tiny RNAs.

Cell. 2004;116(2 Suppl):S93-6, 2 p following S96 - PMID: 15055593 - DOI: 10.1016/s0092-8674(04)00034-0
Total: 2473