Publications for All Faculty

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Qian WJ, Monroe ME, Liu T, Jacobs JM, Anderson GA, Shen Y, Moore RJ, Anderson DJ, Zhang R, Calvano SE, Lowry SF, Xiao W, Moldawer LL, Davis RW, Tompkins RG, Camp DG, Smith RD,

Quantitative proteome analysis of human plasma following in vivo lipopolysaccharide administration using 16O/18O labeling and the accurate mass and time tag approach.

Mol Cell Proteomics. 2005;4(5):700-9 - PMID: 15753121 - PMCID: PMC1829297 - DOI: 10.1074/mcp.M500045-MCP200
Stuart LM, Takahashi K, Shi L, Savill J, Ezekowitz RA

Mannose-binding lectin-deficient mice display defective apoptotic cell clearance but no autoimmune phenotype.

J Immunol. 2005;174(6):3220-6 - PMID: 15749852 - DOI: 10.4049/jimmunol.174.6.3220
Bais HP, Prithiviraj B, Jha AK, Ausubel FM, Vivanco JM

Mediation of pathogen resistance by exudation of antimicrobials from roots.

Nature. 2005;434(7030):217-21 - PMID: 15759001 - DOI: 10.1038/nature03356
Jeyaseelan S, Chu HW, Young SK, Freeman MW, Worthen GS

Distinct roles of pattern recognition receptors CD14 and Toll-like receptor 4 in acute lung injury.

Infect Immun. 2005;73(3):1754-63 - PMID: 15731076 - PMCID: PMC1064978 - DOI: 10.1128/IAI.73.3.1754-1763.2005
Yokoyama T, Banta S, Berthiaume F, Nagrath D, Tompkins RG, Yarmush ML

Evolution of intrahepatic carbon, nitrogen, and energy metabolism in a D-galactosamine-induced rat liver failure model.

Metab Eng. 2005;7(2):88-103 - PMID: 15781418 - DOI: 10.1016/j.ymben.2004.09.003
Sifri CD, Begun J, Ausubel FM

The worm has turned--microbial virulence modeled in Caenorhabditis elegans.

Trends Microbiol. 2005;13(3):119-27 - PMID: 15737730 - DOI: 10.1016/j.tim.2005.01.003
Ichida JK, Zou K, Horhota A, Yu B, McLaughlin LW, Szostak JW

An in vitro selection system for TNA.

J Am Chem Soc. 2005;127(9):2802-3 - PMID: 15740086 - PMCID: PMC5072288 - DOI: 10.1021/ja045364w
Chang JH, Urbach JM, Law TF, Arnold LW, Hu A, Gombar S, Grant SR, Ausubel FM, Dangl JL

A high-throughput, near-saturating screen for type III effector genes from Pseudomonas syringae.

Proc Natl Acad Sci U S A. 2005;102(7):2549-54 - PMID: 15701698 - PMCID: PMC549004 - DOI: 10.1073/pnas.0409660102
Hung DT, Mekalanos JJ

Bile acids induce cholera toxin expression in Vibrio cholerae in a ToxT-independent manner.

Proc Natl Acad Sci U S A. 2005;102(8):3028-33 - PMID: 15699331 - PMCID: PMC549475 - DOI: 10.1073/pnas.0409559102
Begun J, Sifri CD, Goldman S, Calderwood SB, Ausubel FM

Staphylococcus aureus virulence factors identified by using a high-throughput Caenorhabditis elegans-killing model.

Infect Immun. 2005;73(2):872-7 - PMID: 15664928 - PMCID: PMC547013 - DOI: 10.1128/IAI.73.2.872-877.2005
Rolland F, Sheen J

Sugar sensing and signalling networks in plants.

Biochem Soc Trans. 2005;33(Pt 1):269-71 - PMID: 15667323 - DOI: 10.1042/BST0330269
Kim DH, Ausubel FM

Evolutionary perspectives on innate immunity from the study of Caenorhabditis elegans.

Curr Opin Immunol. 2005;17(1):4-10 - PMID: 15653303 - DOI: 10.1016/j.coi.2004.11.007
Qian WJ, Jacobs JM, Camp DG, Monroe ME, Moore RJ, Gritsenko MA, Calvano SE, Lowry SF, Xiao W, Moldawer LL, Davis RW, Tompkins RG, Smith RD

Comparative proteome analyses of human plasma following in vivo lipopolysaccharide administration using multidimensional separations coupled with tandem mass spectrometry.

Proteomics. 2005;5(2):572-84 - PMID: 15627965 - PMCID: PMC1781926 - DOI: 10.1002/pmic.200400942
Lee ML, Gray RJ, Björkbacka H, Freeman MW

Generalized rank tests for replicated microarray data.

Stat Appl Genet Mol Biol. 2005;4:Article3 - PMID: 16646848 - DOI: 10.2202/1544-6115.1093
Cui J, Bahrami AK, Pringle EG, Hernandez-Guzman G, Bender CL, Pierce NE, Ausubel FM

Pseudomonas syringae manipulates systemic plant defenses against pathogens and herbivores.

Proc Natl Acad Sci U S A. 2005;102(5):1791-6 - PMID: 15657122 - PMCID: PMC547856 - DOI: 10.1073/pnas.0409450102
Lopez-Ilasaca MA, Bernabe-Ortiz JC, Na SY, Dzau VJ, Xavier RJ

Bioluminescence resonance energy transfer identify scaffold protein CNK1 interactions in intact cells.

FEBS Lett. 2005;579(3):648-54 - PMID: 15670823 - DOI: 10.1016/j.febslet.2004.12.039
Sosef MN, Baust JM, Sugimachi K, Fowler A, Tompkins RG, Toner M

Cryopreservation of isolated primary rat hepatocytes: enhanced survival and long-term hepatospecific function.

Ann Surg. 2005;241(1):125-33 - PMID: 15622000 - PMCID: PMC1356855 - DOI: 10.1097/01.sla.0000149303.48692.0f
Murthy SK, Sin A, Tompkins RG, Toner M

Effect of flow and surface conditions on human lymphocyte isolation using microfluidic chambers.

Langmuir. 2004;20(26):11649-55 - PMID: 15595794 - DOI: 10.1021/la048047b
Ishiguro K, Cao Z, Ilasca ML, Ando T, Xavier R

Wave2 activates serum response element via its VCA region and functions downstream of Rac.

Exp Cell Res. 2004;301(2):331-7 - PMID: 15530867 - DOI: 10.1016/j.yexcr.2004.09.003
Hanczyc MM, Szostak JW

Replicating vesicles as models of primitive cell growth and division.

Curr Opin Chem Biol. 2004;8(6):660-4 - PMID: 15556412 - DOI: 10.1016/j.cbpa.2004.10.002
Kim WS, Fitzgerald ML, Kang K, Okuhira K, Bell SA, Manning JJ, Koehn SL, Lu N, Moore KJ, Freeman MW

Abca7 null mice retain normal macrophage phosphatidylcholine and cholesterol efflux activity despite alterations in adipose mass and serum cholesterol levels.

J Biol Chem. 2005;280(5):3989-95 - PMID: 15550377 - DOI: 10.1074/jbc.M412602200
Sethu P, Anahtar M, Moldawer LL, Tompkins RG, Toner M

Continuous flow microfluidic device for rapid erythrocyte lysis.

Anal Chem. 2004;76(21):6247-53 - PMID: 15516115 - DOI: 10.1021/ac049429p
Feezor RJ, Baker HV, Mindrinos M, Hayden D, Tannahill CL, Brownstein BH, Fay A, MacMillan S, Laramie J, Xiao W, Moldawer LL, Cobb JP, Laudanski K, Miller-Graziano CL, Maier RV, Schoenfeld D, Davis RW, Tompkins RG,

Whole blood and leukocyte RNA isolation for gene expression analyses.

Physiol Genomics. 2004;19(3):247-54 - PMID: 15548831 - DOI: 10.1152/physiolgenomics.00020.2004
Garsin DA, Urbach J, Huguet-Tapia JC, Peters JE, Ausubel FM

Construction of an Enterococcus faecalis Tn917-mediated-gene-disruption library offers insight into Tn917 insertion patterns.

J Bacteriol. 2004;186(21):7280-9 - PMID: 15489440 - PMCID: PMC523214 - DOI: 10.1128/JB.186.21.7280-7289.2004
Ricci R, Sumara G, Sumara I, Rozenberg I, Kurrer M, Akhmedov A, Hersberger M, Eriksson U, Eberli FR, Becher B, Borén J, Chen M, Cybulsky MI, Moore KJ, Freeman MW, Wagner EF, Matter CM, Lüscher TF

Requirement of JNK2 for scavenger receptor A-mediated foam cell formation in atherogenesis.

Science. 2004;306(5701):1558-61 - PMID: 15567863 - DOI: 10.1126/science.1101909
Total: 2467