Publications for All Faculty

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Mak HY, Nelson LS, Basson M, Johnson CD, Ruvkun G

Polygenic control of Caenorhabditis elegans fat storage.

Nat Genet. 2006;38(3):363-8 - PMID: 16462744 - DOI: 10.1038/ng1739
Meng X, Smith RM, Giesecke AV, Joung JK, Wolfe SA

Counter-selectable marker for bacterial-based interaction trap systems.

Biotechniques. 2006;40(2):179-84 - PMID: 16526407 - DOI: 10.2144/000112049
Cho GS, Szostak JW

Directed evolution of ATP binding proteins from a zinc finger domain by using mRNA display.

Chem Biol. 2006;13(2):139-47 - PMID: 16492562 - DOI: 10.1016/j.chembiol.2005.10.015
Freeman MW

Statins, cholesterol, and the prevention of coronary heart disease.

FASEB J. 2006;20(2):200-1 - PMID: 16449790 - DOI: 10.1096/fj.06-0202ufm
Schöbel S, Neumann S, Seed B, Lichtenthaler SF

Expression cloning screen for modifiers of amyloid precursor protein shedding.

Int J Dev Neurosci. 2006;24(2-3):141-8 - PMID: 16446073 - DOI: 10.1016/j.ijdevneu.2005.11.003
Stuart LM, Henson PM, Vandivier RW

Collectins: opsonins for apoptotic cells and regulators of inflammation.

Curr Dir Autoimmun. 2006;9:143-61 - PMID: 16394659 - DOI: 10.1159/000090778
Hung DT, Zhu J, Sturtevant D, Mekalanos JJ

Bile acids stimulate biofilm formation in Vibrio cholerae.

Mol Microbiol. 2006;59(1):193-201 - PMID: 16359328 - DOI: 10.1111/j.1365-2958.2005.04846.x
Duchaine TF, Wohlschlegel JA, Kennedy S, Bei Y, Conte D, Pang K, Brownell DR, Harding S, Mitani S, Ruvkun G, Yates JR, Mello CC

Functional proteomics reveals the biochemical niche of C. elegans DCR-1 in multiple small-RNA-mediated pathways.

Cell. 2006;124(2):343-54 - PMID: 16439208 - DOI: 10.1016/j.cell.2005.11.036
Ruvkun G

Clarifications on miRNA and cancer.

Science. 2006;311(5757):36-7 - PMID: 16400132 - DOI: 10.1126/science.311.5757.36d
Fujikawa SM, Chen IA, Szostak JW

Shrink-wrap vesicles.

Langmuir. 2005;21(26):12124-9 - PMID: 16342983 - PMCID: PMC2548281 - DOI: 10.1021/la052590q
Lindblad-Toh K, Wade CM, Mikkelsen TS, Karlsson EK, Jaffe DB, Kamal M, Clamp M, Chang JL, Kulbokas EJ, Zody MC, Mauceli E, Xie X, Breen M, Wayne RK, Ostrander EA, Ponting CP, Galibert F, Smith DR, DeJong PJ, Kirkness E, Alvarez P, Biagi T, Brockman W, Butler J, Chin CW, Cook A, Cuff J, Daly MJ, DeCaprio D, Gnerre S, Grabherr M, Kellis M, Kleber M, Bardeleben C, Goodstadt L, Heger A, Hitte C, Kim L, Koepfli KP, Parker HG, Pollinger JP, Searle SM, Sutter NB, Thomas R, Webber C, Baldwin J, Abebe A, Abouelleil A, Aftuck L, Ait-Zahra M, Aldredge T, Allen N, An P, Anderson S, Antoine C, Arachchi H, Aslam A, Ayotte L, Bachantsang P, Barry A, Bayul T, Benamara M, Berlin A, Bessette D, Blitshteyn B, Bloom T, Blye J, Boguslavskiy L, Bonnet C, Boukhgalter B, Brown A, Cahill P, Calixte N, Camarata J, Cheshatsang Y, Chu J, Citroen M, Collymore A, Cooke P, Dawoe T, Daza R, Decktor K, DeGray S, Dhargay N, Dooley K, Dooley K, Dorje P, Dorjee K, Dorris L, Duffey N, Dupes A, Egbiremolen O, Elong R, Falk J, Farina A, Faro S, Ferguson D, Ferreira P, Fisher S, FitzGerald M, Foley K, Foley C, Franke A, Friedrich D, Gage D, Garber M, Gearin G, Giannoukos G, Goode T, Goyette A, Graham J, Grandbois E, Gyaltsen K, Hafez N, Hagopian D, Hagos B, Hall J, Healy C, Hegarty R, Honan T, Horn A, Houde N, Hughes L, Hunnicutt L, Husby M, Jester B, Jones C, Kamat A, Kanga B, Kells C, Khazanovich D, Kieu AC, Kisner P, Kumar M, Lance K, Landers T, Lara M, Lee W, Leger JP, Lennon N, Leuper L, LeVine S, Liu J, Liu X, Lokyitsang Y, Lokyitsang T, Lui A, Macdonald J, Major J, Marabella R, Maru K, Matthews C, McDonough S, Mehta T, Meldrim J, Melnikov A, Meneus L, Mihalev A, Mihova T, Miller K, Mittelman R, Mlenga V, Mulrain L, Munson G, Navidi A, Naylor J, Nguyen T, Nguyen N, Nguyen C, Nguyen T, Nicol R, Norbu N, Norbu C, Novod N, Nyima T, Olandt P, O'Neill B, O'Neill K, Osman S, Oyono L, Patti C, Perrin D, Phunkhang P, Pierre F, Priest M, Rachupka A, Raghuraman S, Rameau R, Ray V, Raymond C, Rege F, Rise C, Rogers J, Rogov P, Sahalie J, Settipalli S, Sharpe T, Shea T, Sheehan M, Sherpa N, Shi J, Shih D, Sloan J, Smith C, Sparrow T, Stalker J, Stange-Thomann N, Stavropoulos S, Stone C, Stone S, Sykes S, Tchuinga P, Tenzing P, Tesfaye S, Thoulutsang D, Thoulutsang Y, Topham K, Topping I, Tsamla T, Vassiliev H, Venkataraman V, Vo A, Wangchuk T, Wangdi T, Weiand M, Wilkinson J, Wilson A, Yadav S, Yang S, Yang X, Young G, Yu Q, Zainoun J, Zembek L, Zimmer A, Lander ES

Genome sequence, comparative analysis and haplotype structure of the domestic dog.

Nature. 2005;438(7069):803-19 - PMID: 16341006 - DOI: 10.1038/nature04338
De AK, Miller-Graziano CL, Calvano SE, Laudanski K, Lowry SF, Moldawer LL, Remick DG, Rajicic N, Schoenfeld D, Tompkins RG

Selective activation of peripheral blood T cell subsets by endotoxin infusion in healthy human subjects corresponds to differential chemokine activation.

J Immunol. 2005;175(9):6155-62 - PMID: 16237112 - DOI: 10.4049/jimmunol.175.9.6155
Hung DT, Shakhnovich EA, Pierson E, Mekalanos JJ

Small-molecule inhibitor of Vibrio cholerae virulence and intestinal colonization.

Science. 2005;310(5748):670-4 - PMID: 16223984 - DOI: 10.1126/science.1116739
Kocks C, Cho JH, Nehme N, Ulvila J, Pearson AM, Meister M, Strom C, Conto SL, Hetru C, Stuart LM, Stehle T, Hoffmann JA, Reichhart JM, Ferrandon D, Rämet M, Ezekowitz RA

Eater, a transmembrane protein mediating phagocytosis of bacterial pathogens in Drosophila.

Cell. 2005;123(2):335-46 - PMID: 16239149 - DOI: 10.1016/j.cell.2005.08.034
Ausubel FM

Are innate immune signaling pathways in plants and animals conserved?

Nat Immunol. 2005;6(10):973-9 - PMID: 16177805 - DOI: 10.1038/ni1253
Plummer KA, Carothers JM, Yoshimura M, Szostak JW, Verdine GL

In vitro selection of RNA aptamers against a composite small molecule-protein surface.

Nucleic Acids Res. 2005;33(17):5602-10 - PMID: 16199752 - PMCID: PMC1240114 - DOI: 10.1093/nar/gki867
Okuhira K, Fitzgerald ML, Sarracino DA, Manning JJ, Bell SA, Goss JL, Freeman MW

Purification of ATP-binding cassette transporter A1 and associated binding proteins reveals the importance of beta1-syntrophin in cholesterol efflux.

J Biol Chem. 2005;280(47):39653-64 - PMID: 16192269 - DOI: 10.1074/jbc.M510187200
Ichida JK, Horhota A, Zou K, McLaughlin LW, Szostak JW

High fidelity TNA synthesis by Therminator polymerase.

Nucleic Acids Res. 2005;33(16):5219-25 - PMID: 16157867 - PMCID: PMC1214552 - DOI: 10.1093/nar/gki840
Storey JD, Xiao W, Leek JT, Tompkins RG, Davis RW

Significance analysis of time course microarray experiments.

Proc Natl Acad Sci U S A. 2005;102(36):12837-42 - PMID: 16141318 - PMCID: PMC1201697 - DOI: 10.1073/pnas.0504609102
Sin A, Murthy SK, Revzin A, Tompkins RG, Toner M

Enrichment using antibody-coated microfluidic chambers in shear flow: model mixtures of human lymphocytes.

Biotechnol Bioeng. 2005;91(7):816-26 - PMID: 16037988 - DOI: 10.1002/bit.20556
Astrakas LG, Goljer I, Yasuhara S, Padfield KE, Zhang Q, Gopalan S, Mindrinos MN, Dai G, Yu YM, Martyn JA, Tompkins RG, Rahme LG, Tzika AA

Proton NMR spectroscopy shows lipids accumulate in skeletal muscle in response to burn trauma-induced apoptosis.

FASEB J. 2005;19(11):1431-40 - PMID: 16126910 - DOI: 10.1096/fj.04-2005com
Chen IA, Salehi-Ashtiani K, Szostak JW

RNA catalysis in model protocell vesicles.

J Am Chem Soc. 2005;127(38):13213-9 - PMID: 16173749 - PMCID: PMC5072289 - DOI: 10.1021/ja051784p
M Freeman, Consultant editor 3rd edition Junge C, Skerret PJ, and Emond, SD.

What to do about high cholesterol

President and Fellows of Harvard College. Harvard Health Publications. 2005;:ePub
MW Freeman

Approach to the patient with hypercholesterolemia. In: Goroll A, May L, Mulley A, eds

Primary Care Medicine, 5th Edition. 2005;:ePub
Lu XM, Lu M, Tompkins RG, Fischman AJ

Site-specific detection of S-nitrosylated PKB alpha/Akt1 from rat soleus muscle using CapLC-Q-TOF(micro) mass spectrometry.

J Mass Spectrom. 2005;40(9):1140-8 - PMID: 16041729 - DOI: 10.1002/jms.885
Total: 2481