Publications for All Faculty

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Moore KJ, Freeman MW

Scavenger receptors in atherosclerosis: beyond lipid uptake.

Arterioscler Thromb Vasc Biol. 2006;26(8):1702-11 - PMID: 16728653 - DOI: 10.1161/01.ATV.0000229218.97976.43
Hu PJ, Xu J, Ruvkun G

Two membrane-associated tyrosine phosphatase homologs potentiate C. elegans AKT-1/PKB signaling.

PLoS Genet. 2006;2(7):e99 - PMID: 16839187 - PMCID: PMC1487177 - DOI: 10.1371/journal.pgen.0020099
Liu T, Qian WJ, Gritsenko MA, Xiao W, Moldawer LL, Kaushal A, Monroe ME, Varnum SM, Moore RJ, Purvine SO, Maier RV, Davis RW, Tompkins RG, Camp DG, Smith RD,

High dynamic range characterization of the trauma patient plasma proteome.

Mol Cell Proteomics. 2006;5(10):1899-913 - PMID: 16684767 - PMCID: PMC1783978 - DOI: 10.1074/mcp.M600068-MCP200
Yasuhara S, Kaneki M, Sugita H, Sugita M, Asai A, Sahani N, Chon JY, Tompkins RG, Martyn JA

Adipocyte apoptosis after burn injury is associated with altered fat metabolism.

J Burn Care Res. 2006;27(3):367-76 - PMID: 16679908 - DOI: 10.1097/01.BCR.0000216777.94365.47
Rolland F, Baena-Gonzalez E, Sheen J

Sugar sensing and signaling in plants: conserved and novel mechanisms.

Annu Rev Plant Biol. 2006;57:675-709 - PMID: 16669778 - DOI: 10.1146/annurev.arplant.57.032905.105441
Beffa DC, Carter EA, Lu XM, Yu YM, Prelack K, Sheridan RL, Young VR, Fischman AJ, Tompkins RG

Negative chemical ionization gas chromatography/mass spectrometry to quantify urinary 3-methylhistidine: application to burn injury.

Anal Biochem. 2006;355(1):95-101 - PMID: 16762308 - DOI: 10.1016/j.ab.2006.03.057
He P, Shan L, Lin NC, Martin GB, Kemmerling B, Nürnberger T, Sheen J

Specific bacterial suppressors of MAMP signaling upstream of MAPKKK in Arabidopsis innate immunity.

Cell. 2006;125(3):563-75 - PMID: 16678099 - DOI: 10.1016/j.cell.2006.02.047
Shinoda M, Tilles AW, Wakabayashi G, Takayanagi A, Harada H, Obara H, Suganuma K, Berthiaume F, Shimazu M, Shimizu N, Kitajima M, Tompkins RG, Toner M, Yarmush ML

Treatment of fulminant hepatic failure in rats using a bioartificial liver device containing porcine hepatocytes producing interleukin-1 receptor antagonist.

Tissue Eng. 2006;12(5):1313-23 - PMID: 16771644 - PMCID: PMC3202215 - DOI: 10.1089/ten.2006.12.1313
Sandoval GM, Duerr JS, Hodgkin J, Rand JB, Ruvkun G

A genetic interaction between the vesicular acetylcholine transporter VAChT/UNC-17 and synaptobrevin/SNB-1 in C. elegans.

Nat Neurosci. 2006;9(5):599-601 - PMID: 16604067 - DOI: 10.1038/nn1685
Giesecke AV, Fang R, Joung JK

Synthetic protein-protein interaction domains created by shuffling Cys2His2 zinc-fingers.

Mol Syst Biol. 2006;2:2006.2011 - PMID: 16732192 - PMCID: PMC1681485 - DOI: 10.1038/msb4100053
Hamel LP, Nicole MC, Sritubtim S, Morency MJ, Ellis M, Ehlting J, Beaudoin N, Barbazuk B, Klessig D, Lee J, Martin G, Mundy J, Ohashi Y, Scheel D, Sheen J, Xing T, Zhang S, Seguin A, Ellis BE

Ancient signals: comparative genomics of plant MAPK and MAPKK gene families.

Trends Plant Sci. 2006;11(4):192-8 - PMID: 16537113 - DOI: 10.1016/j.tplants.2006.02.007
Hartman MC, Josephson K, Szostak JW

Enzymatic aminoacylation of tRNA with unnatural amino acids.

Proc Natl Acad Sci U S A. 2006;103(12):4356-61 - PMID: 16537388 - PMCID: PMC1450175 - DOI: 10.1073/pnas.0509219103
Ishiguro K, Avruch J, Landry A, Qin S, Ando T, Goto H, Xavier R

Nore1B regulates TCR signaling via Ras and Carma1.

Cell Signal. 2006;18(10):1647-54 - PMID: 16520020 - PMCID: PMC3204664 - DOI: 10.1016/j.cellsig.2006.01.015
Sugimachi K, Roach KL, Rhoads DB, Tompkins RG, Toner M

Nonmetabolizable glucose compounds impart cryotolerance to primary rat hepatocytes.

Tissue Eng. 2006;12(3):579-88 - PMID: 16579691 - DOI: 10.1089/ten.2006.12.579
Carothers JM, Davis JH, Chou JJ, Szostak JW

Solution structure of an informationally complex high-affinity RNA aptamer to GTP.

RNA. 2006;12(4):567-79 - PMID: 16510427 - PMCID: PMC1421093 - DOI: 10.1261/rna.2251306
Kulasakara H, Lee V, Brencic A, Liberati N, Urbach J, Miyata S, Lee DG, Neely AN, Hyodo M, Hayakawa Y, Ausubel FM, Lory S

Analysis of Pseudomonas aeruginosa diguanylate cyclases and phosphodiesterases reveals a role for bis-(3'-5')-cyclic-GMP in virulence.

Proc Natl Acad Sci U S A. 2006;103(8):2839-44 - PMID: 16477007 - PMCID: PMC1413825 - DOI: 10.1073/pnas.0511090103
Liberati NT, Urbach JM, Miyata S, Lee DG, Drenkard E, Wu G, Villanueva J, Wei T, Ausubel FM

An ordered, nonredundant library of Pseudomonas aeruginosa strain PA14 transposon insertion mutants.

Proc Natl Acad Sci U S A. 2006;103(8):2833-8 - PMID: 16477005 - PMCID: PMC1413827 - DOI: 10.1073/pnas.0511100103
Mak HY, Nelson LS, Basson M, Johnson CD, Ruvkun G

Polygenic control of Caenorhabditis elegans fat storage.

Nat Genet. 2006;38(3):363-8 - PMID: 16462744 - DOI: 10.1038/ng1739
Meng X, Smith RM, Giesecke AV, Joung JK, Wolfe SA

Counter-selectable marker for bacterial-based interaction trap systems.

Biotechniques. 2006;40(2):179-84 - PMID: 16526407 - DOI: 10.2144/000112049
Cho GS, Szostak JW

Directed evolution of ATP binding proteins from a zinc finger domain by using mRNA display.

Chem Biol. 2006;13(2):139-47 - PMID: 16492562 - DOI: 10.1016/j.chembiol.2005.10.015
Freeman MW

Statins, cholesterol, and the prevention of coronary heart disease.

FASEB J. 2006;20(2):200-1 - PMID: 16449790 - DOI: 10.1096/fj.06-0202ufm
Schöbel S, Neumann S, Seed B, Lichtenthaler SF

Expression cloning screen for modifiers of amyloid precursor protein shedding.

Int J Dev Neurosci. 2006;24(2-3):141-8 - PMID: 16446073 - DOI: 10.1016/j.ijdevneu.2005.11.003
Stuart LM, Henson PM, Vandivier RW

Collectins: opsonins for apoptotic cells and regulators of inflammation.

Curr Dir Autoimmun. 2006;9:143-61 - PMID: 16394659 - DOI: 10.1159/000090778
Hung DT, Zhu J, Sturtevant D, Mekalanos JJ

Bile acids stimulate biofilm formation in Vibrio cholerae.

Mol Microbiol. 2006;59(1):193-201 - PMID: 16359328 - DOI: 10.1111/j.1365-2958.2005.04846.x
Duchaine TF, Wohlschlegel JA, Kennedy S, Bei Y, Conte D, Pang K, Brownell DR, Harding S, Mitani S, Ruvkun G, Yates JR, Mello CC

Functional proteomics reveals the biochemical niche of C. elegans DCR-1 in multiple small-RNA-mediated pathways.

Cell. 2006;124(2):343-54 - PMID: 16439208 - DOI: 10.1016/j.cell.2005.11.036
Total: 2473