Publications for All Faculty

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He P, Shan L, Lin NC, Martin GB, Kemmerling B, Nürnberger T, Sheen J

Specific bacterial suppressors of MAMP signaling upstream of MAPKKK in Arabidopsis innate immunity.

Cell. 2006;125(3):563-75 - PMID: 16678099 - DOI: 10.1016/j.cell.2006.02.047
Shinoda M, Tilles AW, Wakabayashi G, Takayanagi A, Harada H, Obara H, Suganuma K, Berthiaume F, Shimazu M, Shimizu N, Kitajima M, Tompkins RG, Toner M, Yarmush ML

Treatment of fulminant hepatic failure in rats using a bioartificial liver device containing porcine hepatocytes producing interleukin-1 receptor antagonist.

Tissue Eng. 2006;12(5):1313-23 - PMID: 16771644 - PMCID: PMC3202215 - DOI: 10.1089/ten.2006.12.1313
Sandoval GM, Duerr JS, Hodgkin J, Rand JB, Ruvkun G

A genetic interaction between the vesicular acetylcholine transporter VAChT/UNC-17 and synaptobrevin/SNB-1 in C. elegans.

Nat Neurosci. 2006;9(5):599-601 - PMID: 16604067 - DOI: 10.1038/nn1685
Giesecke AV, Fang R, Joung JK

Synthetic protein-protein interaction domains created by shuffling Cys2His2 zinc-fingers.

Mol Syst Biol. 2006;2:2006.2011 - PMID: 16732192 - PMCID: PMC1681485 - DOI: 10.1038/msb4100053
Hamel LP, Nicole MC, Sritubtim S, Morency MJ, Ellis M, Ehlting J, Beaudoin N, Barbazuk B, Klessig D, Lee J, Martin G, Mundy J, Ohashi Y, Scheel D, Sheen J, Xing T, Zhang S, Seguin A, Ellis BE

Ancient signals: comparative genomics of plant MAPK and MAPKK gene families.

Trends Plant Sci. 2006;11(4):192-8 - PMID: 16537113 - DOI: 10.1016/j.tplants.2006.02.007
Hartman MC, Josephson K, Szostak JW

Enzymatic aminoacylation of tRNA with unnatural amino acids.

Proc Natl Acad Sci U S A. 2006;103(12):4356-61 - PMID: 16537388 - PMCID: PMC1450175 - DOI: 10.1073/pnas.0509219103
Ishiguro K, Avruch J, Landry A, Qin S, Ando T, Goto H, Xavier R

Nore1B regulates TCR signaling via Ras and Carma1.

Cell Signal. 2006;18(10):1647-54 - PMID: 16520020 - PMCID: PMC3204664 - DOI: 10.1016/j.cellsig.2006.01.015
Sugimachi K, Roach KL, Rhoads DB, Tompkins RG, Toner M

Nonmetabolizable glucose compounds impart cryotolerance to primary rat hepatocytes.

Tissue Eng. 2006;12(3):579-88 - PMID: 16579691 - DOI: 10.1089/ten.2006.12.579
Carothers JM, Davis JH, Chou JJ, Szostak JW

Solution structure of an informationally complex high-affinity RNA aptamer to GTP.

RNA. 2006;12(4):567-79 - PMID: 16510427 - PMCID: PMC1421093 - DOI: 10.1261/rna.2251306
Kulasakara H, Lee V, Brencic A, Liberati N, Urbach J, Miyata S, Lee DG, Neely AN, Hyodo M, Hayakawa Y, Ausubel FM, Lory S

Analysis of Pseudomonas aeruginosa diguanylate cyclases and phosphodiesterases reveals a role for bis-(3'-5')-cyclic-GMP in virulence.

Proc Natl Acad Sci U S A. 2006;103(8):2839-44 - PMID: 16477007 - PMCID: PMC1413825 - DOI: 10.1073/pnas.0511090103
Liberati NT, Urbach JM, Miyata S, Lee DG, Drenkard E, Wu G, Villanueva J, Wei T, Ausubel FM

An ordered, nonredundant library of Pseudomonas aeruginosa strain PA14 transposon insertion mutants.

Proc Natl Acad Sci U S A. 2006;103(8):2833-8 - PMID: 16477005 - PMCID: PMC1413827 - DOI: 10.1073/pnas.0511100103
Mak HY, Nelson LS, Basson M, Johnson CD, Ruvkun G

Polygenic control of Caenorhabditis elegans fat storage.

Nat Genet. 2006;38(3):363-8 - PMID: 16462744 - DOI: 10.1038/ng1739
Meng X, Smith RM, Giesecke AV, Joung JK, Wolfe SA

Counter-selectable marker for bacterial-based interaction trap systems.

Biotechniques. 2006;40(2):179-84 - PMID: 16526407 - DOI: 10.2144/000112049
Cho GS, Szostak JW

Directed evolution of ATP binding proteins from a zinc finger domain by using mRNA display.

Chem Biol. 2006;13(2):139-47 - PMID: 16492562 - DOI: 10.1016/j.chembiol.2005.10.015
Freeman MW

Statins, cholesterol, and the prevention of coronary heart disease.

FASEB J. 2006;20(2):200-1 - PMID: 16449790 - DOI: 10.1096/fj.06-0202ufm
Schöbel S, Neumann S, Seed B, Lichtenthaler SF

Expression cloning screen for modifiers of amyloid precursor protein shedding.

Int J Dev Neurosci. 2006;24(2-3):141-8 - PMID: 16446073 - DOI: 10.1016/j.ijdevneu.2005.11.003
Stuart LM, Henson PM, Vandivier RW

Collectins: opsonins for apoptotic cells and regulators of inflammation.

Curr Dir Autoimmun. 2006;9:143-61 - PMID: 16394659 - DOI: 10.1159/000090778
Hung DT, Zhu J, Sturtevant D, Mekalanos JJ

Bile acids stimulate biofilm formation in Vibrio cholerae.

Mol Microbiol. 2006;59(1):193-201 - PMID: 16359328 - DOI: 10.1111/j.1365-2958.2005.04846.x
Duchaine TF, Wohlschlegel JA, Kennedy S, Bei Y, Conte D, Pang K, Brownell DR, Harding S, Mitani S, Ruvkun G, Yates JR, Mello CC

Functional proteomics reveals the biochemical niche of C. elegans DCR-1 in multiple small-RNA-mediated pathways.

Cell. 2006;124(2):343-54 - PMID: 16439208 - DOI: 10.1016/j.cell.2005.11.036
Ruvkun G

Clarifications on miRNA and cancer.

Science. 2006;311(5757):36-7 - PMID: 16400132 - DOI: 10.1126/science.311.5757.36d
Fujikawa SM, Chen IA, Szostak JW

Shrink-wrap vesicles.

Langmuir. 2005;21(26):12124-9 - PMID: 16342983 - PMCID: PMC2548281 - DOI: 10.1021/la052590q
Lindblad-Toh K, Wade CM, Mikkelsen TS, Karlsson EK, Jaffe DB, Kamal M, Clamp M, Chang JL, Kulbokas EJ, Zody MC, Mauceli E, Xie X, Breen M, Wayne RK, Ostrander EA, Ponting CP, Galibert F, Smith DR, DeJong PJ, Kirkness E, Alvarez P, Biagi T, Brockman W, Butler J, Chin CW, Cook A, Cuff J, Daly MJ, DeCaprio D, Gnerre S, Grabherr M, Kellis M, Kleber M, Bardeleben C, Goodstadt L, Heger A, Hitte C, Kim L, Koepfli KP, Parker HG, Pollinger JP, Searle SM, Sutter NB, Thomas R, Webber C, Baldwin J, Abebe A, Abouelleil A, Aftuck L, Ait-Zahra M, Aldredge T, Allen N, An P, Anderson S, Antoine C, Arachchi H, Aslam A, Ayotte L, Bachantsang P, Barry A, Bayul T, Benamara M, Berlin A, Bessette D, Blitshteyn B, Bloom T, Blye J, Boguslavskiy L, Bonnet C, Boukhgalter B, Brown A, Cahill P, Calixte N, Camarata J, Cheshatsang Y, Chu J, Citroen M, Collymore A, Cooke P, Dawoe T, Daza R, Decktor K, DeGray S, Dhargay N, Dooley K, Dooley K, Dorje P, Dorjee K, Dorris L, Duffey N, Dupes A, Egbiremolen O, Elong R, Falk J, Farina A, Faro S, Ferguson D, Ferreira P, Fisher S, FitzGerald M, Foley K, Foley C, Franke A, Friedrich D, Gage D, Garber M, Gearin G, Giannoukos G, Goode T, Goyette A, Graham J, Grandbois E, Gyaltsen K, Hafez N, Hagopian D, Hagos B, Hall J, Healy C, Hegarty R, Honan T, Horn A, Houde N, Hughes L, Hunnicutt L, Husby M, Jester B, Jones C, Kamat A, Kanga B, Kells C, Khazanovich D, Kieu AC, Kisner P, Kumar M, Lance K, Landers T, Lara M, Lee W, Leger JP, Lennon N, Leuper L, LeVine S, Liu J, Liu X, Lokyitsang Y, Lokyitsang T, Lui A, Macdonald J, Major J, Marabella R, Maru K, Matthews C, McDonough S, Mehta T, Meldrim J, Melnikov A, Meneus L, Mihalev A, Mihova T, Miller K, Mittelman R, Mlenga V, Mulrain L, Munson G, Navidi A, Naylor J, Nguyen T, Nguyen N, Nguyen C, Nguyen T, Nicol R, Norbu N, Norbu C, Novod N, Nyima T, Olandt P, O'Neill B, O'Neill K, Osman S, Oyono L, Patti C, Perrin D, Phunkhang P, Pierre F, Priest M, Rachupka A, Raghuraman S, Rameau R, Ray V, Raymond C, Rege F, Rise C, Rogers J, Rogov P, Sahalie J, Settipalli S, Sharpe T, Shea T, Sheehan M, Sherpa N, Shi J, Shih D, Sloan J, Smith C, Sparrow T, Stalker J, Stange-Thomann N, Stavropoulos S, Stone C, Stone S, Sykes S, Tchuinga P, Tenzing P, Tesfaye S, Thoulutsang D, Thoulutsang Y, Topham K, Topping I, Tsamla T, Vassiliev H, Venkataraman V, Vo A, Wangchuk T, Wangdi T, Weiand M, Wilkinson J, Wilson A, Yadav S, Yang S, Yang X, Young G, Yu Q, Zainoun J, Zembek L, Zimmer A, Lander ES

Genome sequence, comparative analysis and haplotype structure of the domestic dog.

Nature. 2005;438(7069):803-19 - PMID: 16341006 - DOI: 10.1038/nature04338
De AK, Miller-Graziano CL, Calvano SE, Laudanski K, Lowry SF, Moldawer LL, Remick DG, Rajicic N, Schoenfeld D, Tompkins RG

Selective activation of peripheral blood T cell subsets by endotoxin infusion in healthy human subjects corresponds to differential chemokine activation.

J Immunol. 2005;175(9):6155-62 - PMID: 16237112 - DOI: 10.4049/jimmunol.175.9.6155
Hung DT, Shakhnovich EA, Pierson E, Mekalanos JJ

Small-molecule inhibitor of Vibrio cholerae virulence and intestinal colonization.

Science. 2005;310(5748):670-4 - PMID: 16223984 - DOI: 10.1126/science.1116739
Kocks C, Cho JH, Nehme N, Ulvila J, Pearson AM, Meister M, Strom C, Conto SL, Hetru C, Stuart LM, Stehle T, Hoffmann JA, Reichhart JM, Ferrandon D, Rämet M, Ezekowitz RA

Eater, a transmembrane protein mediating phagocytosis of bacterial pathogens in Drosophila.

Cell. 2005;123(2):335-46 - PMID: 16239149 - DOI: 10.1016/j.cell.2005.08.034
Total: 2467