Publications for All Faculty

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Bindschedler LV, Dewdney J, Blee KA, Stone JM, Asai T, Plotnikov J, Denoux C, Hayes T, Gerrish C, Davies DR, Ausubel FM, Bolwell GP

Peroxidase-dependent apoplastic oxidative burst in Arabidopsis required for pathogen resistance.

Plant J. 2006;47(6):851-63 - PMID: 16889645 - PMCID: PMC3233234 - DOI: 10.1111/j.1365-313X.2006.02837.x
Padfield KE, Zhang Q, Gopalan S, Tzika AA, Mindrinos MN, Tompkins RG, Rahme LG

Local and distant burn injury alter immuno-inflammatory gene expression in skeletal muscle.

J Trauma. 2006;61(2):280-92 - PMID: 16917440 - DOI: 10.1097/01.ta.0000230567.56797.6c
Sethu P, Moldawer LL, Mindrinos MN, Scumpia PO, Tannahill CL, Wilhelmy J, Efron PA, Brownstein BH, Tompkins RG, Toner M

Microfluidic isolation of leukocytes from whole blood for phenotype and gene expression analysis.

Anal Chem. 2006;78(15):5453-61 - PMID: 16878882 - DOI: 10.1021/ac060140c
Ishiguro K, Ando T, Maeda O, Hasegawa M, Kadomatsu K, Ohmiya N, Niwa Y, Xavier R, Goto H

Paeonol attenuates TNBS-induced colitis by inhibiting NF-kappaB and STAT1 transactivation.

Toxicol Appl Pharmacol. 2006;217(1):35-42 - PMID: 16928387 - DOI: 10.1016/j.taap.2006.07.002
Rideout K, Seed B, Ostry A

Putting food on the public health table: Making food security relevant to regional health authorities.

Can J Public Health. 2006;97(3):233-6 - PMID: 16827415 - PMCID: PMC6976105 - DOI: 10.1007/BF03405593
Giallourakis C, Cao Z, Green T, Wachtel H, Xie X, Lopez-Illasaca M, Daly M, Rioux J, Xavier R

A molecular-properties-based approach to understanding PDZ domain proteins and PDZ ligands.

Genome Res. 2006;16(8):1056-72 - PMID: 16825666 - PMCID: PMC1524865 - DOI: 10.1101/gr.5285206
Klein MB, Silver G, Gamelli RL, Gibran NS, Herndon DN, Hunt JL, Tompkins RG,

Inflammation and the host response to injury: an overview of the multicenter study of the genomic and proteomic response to burn injury.

J Burn Care Res. 2006;27(4):448-51 - PMID: 16819346 - DOI: 10.1097/01.BCR.0000227477.33877.E6
Kuo WP, Liu F, Trimarchi J, Punzo C, Lombardi M, Sarang J, Whipple ME, Maysuria M, Serikawa K, Lee SY, McCrann D, Kang J, Shearstone JR, Burke J, Park DJ, Wang X, Rector TL, Ricciardi-Castagnoli P, Perrin S, Choi S, Bumgarner R, Kim JH, Short GF, Freeman MW, Seed B, Jensen R, Church GM, Hovig E, Cepko CL, Park P, Ohno-Machado L, Jenssen TK

A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies.

Nat Biotechnol. 2006;24(7):832-40 - PMID: 16823376 - DOI: 10.1038/nbt1217
Ishiguro K, Green T, Rapley J, Wachtel H, Giallourakis C, Landry A, Cao Z, Lu N, Takafumi A, Goto H, Daly MJ, Xavier RJ

Ca2+/calmodulin-dependent protein kinase II is a modulator of CARMA1-mediated NF-kappaB activation.

Mol Cell Biol. 2006;26(14):5497-508 - PMID: 16809782 - PMCID: PMC1592706 - DOI: 10.1128/MCB.02469-05
Hung DT, Rubin EJ

Chemical biology and bacteria: not simply a matter of life or death.

Curr Opin Chem Biol. 2006;10(4):321-6 - PMID: 16814591 - DOI: 10.1016/j.cbpa.2006.06.016
Landry A, Xavier R

Isolation and analysis of lipid rafts in cell-cell interactions.

Methods Mol Biol. 2006;341:251-82 - PMID: 16799204 - DOI: 10.1385/1-59745-113-4:251
Moy TI, Ball AR, Anklesaria Z, Casadei G, Lewis K, Ausubel FM

Identification of novel antimicrobials using a live-animal infection model.

Proc Natl Acad Sci U S A. 2006;103(27):10414-9 - PMID: 16801562 - PMCID: PMC1482800 - DOI: 10.1073/pnas.0604055103
Liu SM, Xavier R, Good KL, Chtanova T, Newton R, Sisavanh M, Zimmer S, Deng C, Silva DG, Frost MJ, Tangye SG, Rolph MS, Mackay CR

Immune cell transcriptome datasets reveal novel leukocyte subset-specific genes and genes associated with allergic processes.

J Allergy Clin Immunol. 2006;118(2):496-503 - PMID: 16890777 - DOI: 10.1016/j.jaci.2006.04.040
Sekine K, Revzin A, Tompkins RG, Toner M

Panning of multiple subsets of leukocytes on antibody-decorated poly(ethylene) glycol-coated glass slides.

J Immunol Methods. 2006;313(1-2):96-109 - PMID: 16822521 - DOI: 10.1016/j.jim.2006.03.017
Bush J, Jander G, Ausubel FM

Prevention and control of pests and diseases.

Methods Mol Biol. 2006;323:13-25 - PMID: 16739564 - DOI: 10.1385/1-59745-003-0:13
Carothers JM, Oestreich SC, Szostak JW

Aptamers selected for higher-affinity binding are not more specific for the target ligand.

J Am Chem Soc. 2006;128(24):7929-37 - PMID: 16771507 - PMCID: PMC4287982 - DOI: 10.1021/ja060952q
Hatchell EC, Colley SM, Beveridge DJ, Epis MR, Stuart LM, Giles KM, Redfern AD, Miles LE, Barker A, MacDonald LM, Arthur PG, Lui JC, Golding JL, McCulloch RK, Metcalf CB, Wilce JA, Wilce MC, Lanz RB, O'Malley BW, Leedman PJ

SLIRP, a small SRA binding protein, is a nuclear receptor corepressor.

Mol Cell. 2006;22(5):657-68 - PMID: 16762838 - DOI: 10.1016/j.molcel.2006.05.024
Medoff BD, Seed B, Jackobek R, Zora J, Yang Y, Luster AD, Xavier R

CARMA1 is critical for the development of allergic airway inflammation in a murine model of asthma.

J Immunol. 2006;176(12):7272-7 - PMID: 16751370 - DOI: 10.4049/jimmunol.176.12.7272
Seebeck FP, Szostak JW

Ribosomal synthesis of dehydroalanine-containing peptides.

J Am Chem Soc. 2006;128(22):7150-1 - PMID: 16734454 - PMCID: PMC2572134 - DOI: 10.1021/ja060966w
Moore KJ, Freeman MW

Scavenger receptors in atherosclerosis: beyond lipid uptake.

Arterioscler Thromb Vasc Biol. 2006;26(8):1702-11 - PMID: 16728653 - DOI: 10.1161/01.ATV.0000229218.97976.43
Hu PJ, Xu J, Ruvkun G

Two membrane-associated tyrosine phosphatase homologs potentiate C. elegans AKT-1/PKB signaling.

PLoS Genet. 2006;2(7):e99 - PMID: 16839187 - PMCID: PMC1487177 - DOI: 10.1371/journal.pgen.0020099
Liu T, Qian WJ, Gritsenko MA, Xiao W, Moldawer LL, Kaushal A, Monroe ME, Varnum SM, Moore RJ, Purvine SO, Maier RV, Davis RW, Tompkins RG, Camp DG, Smith RD,

High dynamic range characterization of the trauma patient plasma proteome.

Mol Cell Proteomics. 2006;5(10):1899-913 - PMID: 16684767 - PMCID: PMC1783978 - DOI: 10.1074/mcp.M600068-MCP200
Yasuhara S, Kaneki M, Sugita H, Sugita M, Asai A, Sahani N, Chon JY, Tompkins RG, Martyn JA

Adipocyte apoptosis after burn injury is associated with altered fat metabolism.

J Burn Care Res. 2006;27(3):367-76 - PMID: 16679908 - DOI: 10.1097/01.BCR.0000216777.94365.47
Rolland F, Baena-Gonzalez E, Sheen J

Sugar sensing and signaling in plants: conserved and novel mechanisms.

Annu Rev Plant Biol. 2006;57:675-709 - PMID: 16669778 - DOI: 10.1146/annurev.arplant.57.032905.105441
Beffa DC, Carter EA, Lu XM, Yu YM, Prelack K, Sheridan RL, Young VR, Fischman AJ, Tompkins RG

Negative chemical ionization gas chromatography/mass spectrometry to quantify urinary 3-methylhistidine: application to burn injury.

Anal Biochem. 2006;355(1):95-101 - PMID: 16762308 - DOI: 10.1016/j.ab.2006.03.057
Total: 2467