Publications for All Faculty

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Lee DG, Urbach JM, Wu G, Liberati NT, Feinbaum RL, Miyata S, Diggins LT, He J, Saucier M, Déziel E, Friedman L, Li L, Grills G, Montgomery K, Kucherlapati R, Rahme LG, Ausubel FM

Genomic analysis reveals that Pseudomonas aeruginosa virulence is combinatorial.

Genome Biol. 2006;7(10):R90 - PMID: 17038190 - PMCID: PMC1794565 - DOI: 10.1186/gb-2006-7-10-r90
Laudanski K, Miller-Graziano C, Xiao W, Mindrinos MN, Richards DR, De A, Moldawer LL, Maier RV, Bankey P, Baker HV, Brownstein BH, Cobb JP, Calvano SE, Davis RW, Tompkins RG

Cell-specific expression and pathway analyses reveal alterations in trauma-related human T cell and monocyte pathways.

Proc Natl Acad Sci U S A. 2006;103(42):15564-9 - PMID: 17032758 - PMCID: PMC1592643 - DOI: 10.1073/pnas.0607028103
Ball AR, Casadei G, Samosorn S, Bremner JB, Ausubel FM, Moy TI, Lewis K

Conjugating berberine to a multidrug efflux pump inhibitor creates an effective antimicrobial.

ACS Chem Biol. 2006;1(9):594-600 - PMID: 17168555 - DOI: 10.1021/cb600238x
Blackburn EH, Greider CW, Szostak JW

Telomeres and telomerase: the path from maize, Tetrahymena and yeast to human cancer and aging.

Nat Med. 2006;12(10):1133-8 - PMID: 17024208 - DOI: 10.1038/nm1006-1133
Yamamoto-Furusho JK, Barnich N, Xavier R, Hisamatsu T, Podolsky DK

Centaurin beta1 down-regulates nucleotide-binding oligomerization domains 1- and 2-dependent NF-kappaB activation.

J Biol Chem. 2006;281(47):36060-70 - PMID: 17005562 - DOI: 10.1074/jbc.M602383200
Ruvinsky I, Ohler U, Burge CB, Ruvkun G

Detection of broadly expressed neuronal genes in C. elegans.

Dev Biol. 2007;302(2):617-26 - PMID: 17046742 - DOI: 10.1016/j.ydbio.2006.09.014
Troemel ER, Chu SW, Reinke V, Lee SS, Ausubel FM, Kim DH

p38 MAPK regulates expression of immune response genes and contributes to longevity in C. elegans.

PLoS Genet. 2006;2(11):e183 - PMID: 17096597 - PMCID: PMC1635533 - DOI: 10.1371/journal.pgen.0020183
Salehi-Ashtiani K, Lupták A, Litovchick A, Szostak JW

A genomewide search for ribozymes reveals an HDV-like sequence in the human CPEB3 gene.

Science. 2006;313(5794):1788-92 - PMID: 16990549 - DOI: 10.1126/science.1129308
Lucas M, Stuart LM, Zhang A, Hodivala-Dilke K, Febbraio M, Silverstein R, Savill J, Lacy-Hulbert A

Requirements for apoptotic cell contact in regulation of macrophage responses.

J Immunol. 2006;177(6):4047-54 - PMID: 16951368 - DOI: 10.4049/jimmunol.177.6.4047
MW Freeman

Lipid Disorders and Coronary Heart Disease. In: Runge, MS and Patterson, W Eds.

Molecular Medicine. 2006;:ePub
MW Freeman and KJ Moore

Scavenger receptors in atherosclerosis

Arterioscler Thromb Vasc Biol. 2006;8:1702-1711
MW Freeman

Statins, cholesterol, and the prevention of coronary heart disease

FASEB J. 2006;20(2):200-201
Derdak SV, Kueng HJ, Leb VM, Neunkirchner A, Schmetterer KG, Bielek E, Majdic O, Knapp W, Seed B, Pickl WF

Direct stimulation of T lymphocytes by immunosomes: virus-like particles decorated with T cell receptor/CD3 ligands plus costimulatory molecules.

Proc Natl Acad Sci U S A. 2006;103(35):13144-9 - PMID: 16924110 - PMCID: PMC1559767 - DOI: 10.1073/pnas.0602283103
Hanczyc MM, Mansy SS, Szostak JW

Mineral surface directed membrane assembly.

Orig Life Evol Biosph. 2007;37(1):67-82 - PMID: 16909329 - DOI: 10.1007/s11084-006-9018-5
Bindschedler LV, Dewdney J, Blee KA, Stone JM, Asai T, Plotnikov J, Denoux C, Hayes T, Gerrish C, Davies DR, Ausubel FM, Bolwell GP

Peroxidase-dependent apoplastic oxidative burst in Arabidopsis required for pathogen resistance.

Plant J. 2006;47(6):851-63 - PMID: 16889645 - PMCID: PMC3233234 - DOI: 10.1111/j.1365-313X.2006.02837.x
Padfield KE, Zhang Q, Gopalan S, Tzika AA, Mindrinos MN, Tompkins RG, Rahme LG

Local and distant burn injury alter immuno-inflammatory gene expression in skeletal muscle.

J Trauma. 2006;61(2):280-92 - PMID: 16917440 - DOI: 10.1097/01.ta.0000230567.56797.6c
Sethu P, Moldawer LL, Mindrinos MN, Scumpia PO, Tannahill CL, Wilhelmy J, Efron PA, Brownstein BH, Tompkins RG, Toner M

Microfluidic isolation of leukocytes from whole blood for phenotype and gene expression analysis.

Anal Chem. 2006;78(15):5453-61 - PMID: 16878882 - DOI: 10.1021/ac060140c
Ishiguro K, Ando T, Maeda O, Hasegawa M, Kadomatsu K, Ohmiya N, Niwa Y, Xavier R, Goto H

Paeonol attenuates TNBS-induced colitis by inhibiting NF-kappaB and STAT1 transactivation.

Toxicol Appl Pharmacol. 2006;217(1):35-42 - PMID: 16928387 - DOI: 10.1016/j.taap.2006.07.002
Rideout K, Seed B, Ostry A

Putting food on the public health table: Making food security relevant to regional health authorities.

Can J Public Health. 2006;97(3):233-6 - PMID: 16827415 - PMCID: PMC6976105 - DOI: 10.1007/BF03405593
Giallourakis C, Cao Z, Green T, Wachtel H, Xie X, Lopez-Illasaca M, Daly M, Rioux J, Xavier R

A molecular-properties-based approach to understanding PDZ domain proteins and PDZ ligands.

Genome Res. 2006;16(8):1056-72 - PMID: 16825666 - PMCID: PMC1524865 - DOI: 10.1101/gr.5285206
Klein MB, Silver G, Gamelli RL, Gibran NS, Herndon DN, Hunt JL, Tompkins RG,

Inflammation and the host response to injury: an overview of the multicenter study of the genomic and proteomic response to burn injury.

J Burn Care Res. 2006;27(4):448-51 - PMID: 16819346 - DOI: 10.1097/01.BCR.0000227477.33877.E6
Kuo WP, Liu F, Trimarchi J, Punzo C, Lombardi M, Sarang J, Whipple ME, Maysuria M, Serikawa K, Lee SY, McCrann D, Kang J, Shearstone JR, Burke J, Park DJ, Wang X, Rector TL, Ricciardi-Castagnoli P, Perrin S, Choi S, Bumgarner R, Kim JH, Short GF, Freeman MW, Seed B, Jensen R, Church GM, Hovig E, Cepko CL, Park P, Ohno-Machado L, Jenssen TK

A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies.

Nat Biotechnol. 2006;24(7):832-40 - PMID: 16823376 - DOI: 10.1038/nbt1217
Ishiguro K, Green T, Rapley J, Wachtel H, Giallourakis C, Landry A, Cao Z, Lu N, Takafumi A, Goto H, Daly MJ, Xavier RJ

Ca2+/calmodulin-dependent protein kinase II is a modulator of CARMA1-mediated NF-kappaB activation.

Mol Cell Biol. 2006;26(14):5497-508 - PMID: 16809782 - PMCID: PMC1592706 - DOI: 10.1128/MCB.02469-05
Hung DT, Rubin EJ

Chemical biology and bacteria: not simply a matter of life or death.

Curr Opin Chem Biol. 2006;10(4):321-6 - PMID: 16814591 - DOI: 10.1016/j.cbpa.2006.06.016
Landry A, Xavier R

Isolation and analysis of lipid rafts in cell-cell interactions.

Methods Mol Biol. 2006;341:251-82 - PMID: 16799204 - DOI: 10.1385/1-59745-113-4:251
Total: 2481