Publications for All Faculty

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Lee DG, Urbach JM, Wu G, Liberati NT, Feinbaum RL, Miyata S, Diggins LT, He J, Saucier M, Déziel E, Friedman L, Li L, Grills G, Montgomery K, Kucherlapati R, Rahme LG, Ausubel FM

Genomic analysis reveals that Pseudomonas aeruginosa virulence is combinatorial.
Genome Biol. 2006;7(10):R90 - PMID: 17038190 - PMCID: PMC1794565 - DOI: 10.1186/gb-2006-7-10-r90

Laudanski K, Miller-Graziano C, Xiao W, Mindrinos MN, Richards DR, De A, Moldawer LL, Maier RV, Bankey P, Baker HV, Brownstein BH, Cobb JP, Calvano SE, Davis RW, Tompkins RG

Cell-specific expression and pathway analyses reveal alterations in trauma-related human T cell and monocyte pathways.
Proc Natl Acad Sci U S A. 2006;103(42):15564-9 - PMID: 17032758 - PMCID: PMC1592643 - DOI: 10.1073/pnas.0607028103

Ball AR, Casadei G, Samosorn S, Bremner JB, Ausubel FM, Moy TI, Lewis K

Conjugating berberine to a multidrug efflux pump inhibitor creates an effective antimicrobial.
ACS Chem Biol. 2006;1(9):594-600 - PMID: 17168555 - DOI: 10.1021/cb600238x

Blackburn EH, Greider CW, Szostak JW

Telomeres and telomerase: the path from maize, Tetrahymena and yeast to human cancer and aging.
Nat Med. 2006;12(10):1133-8 - PMID: 17024208 - DOI: 10.1038/nm1006-1133

Yamamoto-Furusho JK, Barnich N, Xavier R, Hisamatsu T, Podolsky DK

Centaurin beta1 down-regulates nucleotide-binding oligomerization domains 1- and 2-dependent NF-kappaB activation.
J Biol Chem. 2006;281(47):36060-70 - PMID: 17005562 - DOI: 10.1074/jbc.M602383200

Ruvinsky I, Ohler U, Burge CB, Ruvkun G

Detection of broadly expressed neuronal genes in C. elegans.
Dev Biol. 2007;302(2):617-26 - PMID: 17046742 - DOI: 10.1016/j.ydbio.2006.09.014

Troemel ER, Chu SW, Reinke V, Lee SS, Ausubel FM, Kim DH

p38 MAPK regulates expression of immune response genes and contributes to longevity in C. elegans.
PLoS Genet. 2006;2(11):e183 - PMID: 17096597 - PMCID: PMC1635533 - DOI: 10.1371/journal.pgen.0020183

Salehi-Ashtiani K, Lupták A, Litovchick A, Szostak JW

A genomewide search for ribozymes reveals an HDV-like sequence in the human CPEB3 gene.
Science. 2006;313(5794):1788-92 - PMID: 16990549 - DOI: 10.1126/science.1129308

Lucas M, Stuart LM, Zhang A, Hodivala-Dilke K, Febbraio M, Silverstein R, Savill J, Lacy-Hulbert A

Requirements for apoptotic cell contact in regulation of macrophage responses.
J Immunol. 2006;177(6):4047-54 - PMID: 16951368 - DOI: 10.4049/jimmunol.177.6.4047

MW Freeman

Lipid Disorders and Coronary Heart Disease. In: Runge, MS and Patterson, W Eds.
Molecular Medicine. 2006;:ePub

MW Freeman and KJ Moore

Scavenger receptors in atherosclerosis
Arterioscler Thromb Vasc Biol. 2006;8:1702-1711

MW Freeman

Statins, cholesterol, and the prevention of coronary heart disease
FASEB J. 2006;20(2):200-201

Derdak SV, Kueng HJ, Leb VM, Neunkirchner A, Schmetterer KG, Bielek E, Majdic O, Knapp W, Seed B, Pickl WF

Direct stimulation of T lymphocytes by immunosomes: virus-like particles decorated with T cell receptor/CD3 ligands plus costimulatory molecules.
Proc Natl Acad Sci U S A. 2006;103(35):13144-9 - PMID: 16924110 - PMCID: PMC1559767 - DOI: 10.1073/pnas.0602283103

Hanczyc MM, Mansy SS, Szostak JW

Mineral surface directed membrane assembly.
Orig Life Evol Biosph. 2007;37(1):67-82 - PMID: 16909329 - DOI: 10.1007/s11084-006-9018-5

Bindschedler LV, Dewdney J, Blee KA, Stone JM, Asai T, Plotnikov J, Denoux C, Hayes T, Gerrish C, Davies DR, Ausubel FM, Bolwell GP

Peroxidase-dependent apoplastic oxidative burst in Arabidopsis required for pathogen resistance.
Plant J. 2006;47(6):851-63 - PMID: 16889645 - PMCID: PMC3233234 - DOI: 10.1111/j.1365-313X.2006.02837.x

Padfield KE, Zhang Q, Gopalan S, Tzika AA, Mindrinos MN, Tompkins RG, Rahme LG

Local and distant burn injury alter immuno-inflammatory gene expression in skeletal muscle.
J Trauma. 2006;61(2):280-92 - PMID: 16917440 - DOI: 10.1097/01.ta.0000230567.56797.6c

Sethu P, Moldawer LL, Mindrinos MN, Scumpia PO, Tannahill CL, Wilhelmy J, Efron PA, Brownstein BH, Tompkins RG, Toner M

Microfluidic isolation of leukocytes from whole blood for phenotype and gene expression analysis.
Anal Chem. 2006;78(15):5453-61 - PMID: 16878882 - DOI: 10.1021/ac060140c

Ishiguro K, Ando T, Maeda O, Hasegawa M, Kadomatsu K, Ohmiya N, Niwa Y, Xavier R, Goto H

Paeonol attenuates TNBS-induced colitis by inhibiting NF-kappaB and STAT1 transactivation.
Toxicol Appl Pharmacol. 2006;217(1):35-42 - PMID: 16928387 - DOI: 10.1016/j.taap.2006.07.002

Rideout K, Seed B, Ostry A

Putting food on the public health table: Making food security relevant to regional health authorities.
Can J Public Health. 2006;97(3):233-6 - PMID: 16827415 - PMCID: PMC6976105 - DOI: 10.1007/BF03405593

Giallourakis C, Cao Z, Green T, Wachtel H, Xie X, Lopez-Illasaca M, Daly M, Rioux J, Xavier R

A molecular-properties-based approach to understanding PDZ domain proteins and PDZ ligands.
Genome Res. 2006;16(8):1056-72 - PMID: 16825666 - PMCID: PMC1524865 - DOI: 10.1101/gr.5285206

Klein MB, Silver G, Gamelli RL, Gibran NS, Herndon DN, Hunt JL, Tompkins RG,

Inflammation and the host response to injury: an overview of the multicenter study of the genomic and proteomic response to burn injury.
J Burn Care Res. 2006;27(4):448-51 - PMID: 16819346 - DOI: 10.1097/01.BCR.0000227477.33877.E6

Kuo WP, Liu F, Trimarchi J, Punzo C, Lombardi M, Sarang J, Whipple ME, Maysuria M, Serikawa K, Lee SY, McCrann D, Kang J, Shearstone JR, Burke J, Park DJ, Wang X, Rector TL, Ricciardi-Castagnoli P, Perrin S, Choi S, Bumgarner R, Kim JH, Short GF, Freeman MW, Seed B, Jensen R, Church GM, Hovig E, Cepko CL, Park P, Ohno-Machado L, Jenssen TK

A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies.
Nat Biotechnol. 2006;24(7):832-40 - PMID: 16823376 - DOI: 10.1038/nbt1217

Ishiguro K, Green T, Rapley J, Wachtel H, Giallourakis C, Landry A, Cao Z, Lu N, Takafumi A, Goto H, Daly MJ, Xavier RJ

Ca2+/calmodulin-dependent protein kinase II is a modulator of CARMA1-mediated NF-kappaB activation.
Mol Cell Biol. 2006;26(14):5497-508 - PMID: 16809782 - PMCID: PMC1592706 - DOI: 10.1128/MCB.02469-05

Hung DT, Rubin EJ

Chemical biology and bacteria: not simply a matter of life or death.
Curr Opin Chem Biol. 2006;10(4):321-6 - PMID: 16814591 - DOI: 10.1016/j.cbpa.2006.06.016

Moy TI, Ball AR, Anklesaria Z, Casadei G, Lewis K, Ausubel FM

Identification of novel antimicrobials using a live-animal infection model.
Proc Natl Acad Sci U S A. 2006;103(27):10414-9 - PMID: 16801562 - PMCID: PMC1482800 - DOI: 10.1073/pnas.0604055103
Total: 2481