Publications for All Faculty

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Meng X, Thibodeau-Beganny S, Jiang T, Joung JK, Wolfe SA

Profiling the DNA-binding specificities of engineered Cys2His2 zinc finger domains using a rapid cell-based method.

Nucleic Acids Res. 2007;35(11):e81 - PMID: 17537811 - PMCID: PMC1920264 - DOI: 10.1093/nar/gkm385
Mansy SS, Zhang J, Kümmerle R, Nilsson M, Chou JJ, Szostak JW, Chaput JC

Structure and evolutionary analysis of a non-biological ATP-binding protein.

J Mol Biol. 2007;371(2):501-13 - PMID: 17583732 - DOI: 10.1016/j.jmb.2007.05.062
Sander JD, Zaback P, Joung JK, Voytas DF, Dobbs D

Zinc Finger Targeter (ZiFiT): an engineered zinc finger/target site design tool.

Nucleic Acids Res. 2007;35(Web Server issue):W599-605 - PMID: 17526515 - PMCID: PMC1933188 - DOI: 10.1093/nar/gkm349
Smith MD, Rosenow MA, Wang M, Allen JP, Szostak JW, Chaput JC

Structural insights into the evolution of a non-biological protein: importance of surface residues in protein fold optimization.

PLoS One. 2007;2(5):e467 - PMID: 17520026 - PMCID: PMC1867856 - DOI: 10.1371/journal.pone.0000467
Hazen RM, Griffin PL, Carothers JM, Szostak JW

Functional information and the emergence of biocomplexity.

Proc Natl Acad Sci U S A. 2007;104 Suppl 1:8574-81 - PMID: 17494745 - PMCID: PMC1876432 - DOI: 10.1073/pnas.0701744104
van Passel MW, Smillie CS, Ochman H

Gene decay in archaea.

Archaea. 2007;2(2):137-43 - PMID: 17350934 - PMCID: PMC2686384 - DOI: 10.1155/2007/165723
Shan L, He P, Sheen J

Intercepting host MAPK signaling cascades by bacterial type III effectors.

Cell Host Microbe. 2007;1(3):167-74 - PMID: 18005696 - DOI: 10.1016/j.chom.2007.04.008
Goyette P, Labbé C, Trinh TT, Xavier RJ, Rioux JD

Molecular pathogenesis of inflammatory bowel disease: genotypes, phenotypes and personalized medicine.

Ann Med. 2007;39(3):177-99 - PMID: 17457716 - DOI: 10.1080/07853890701197615
He P, Shan L, Sheen J

Elicitation and suppression of microbe-associated molecular pattern-triggered immunity in plant-microbe interactions.

Cell Microbiol. 2007;9(6):1385-96 - PMID: 17451411 - DOI: 10.1111/j.1462-5822.2007.00944.x
Rioux JD, Xavier RJ, Taylor KD, Silverberg MS, Goyette P, Huett A, Green T, Kuballa P, Barmada MM, Datta LW, Shugart YY, Griffiths AM, Targan SR, Ippoliti AF, Bernard EJ, Mei L, Nicolae DL, Regueiro M, Schumm LP, Steinhart AH, Rotter JI, Duerr RH, Cho JH, Daly MJ, Brant SR

Genome-wide association study identifies new susceptibility loci for Crohn disease and implicates autophagy in disease pathogenesis.

Nat Genet. 2007;39(5):596-604 - PMID: 17435756 - PMCID: PMC2757939 - DOI: 10.1038/ng2032
Wright DA, Thibodeau-Beganny S, Sander JD, Winfrey RJ, Hirsh AS, Eichtinger M, Fu F, Porteus MH, Dobbs D, Voytas DF, Joung JK

Standardized reagents and protocols for engineering zinc finger nucleases by modular assembly.

Nat Protoc. 2007;1(3):1637-52 - PMID: 17406455 - DOI: 10.1038/nprot.2006.259
Begun J, Gaiani JM, Rohde H, Mack D, Calderwood SB, Ausubel FM, Sifri CD

Staphylococcal biofilm exopolysaccharide protects against Caenorhabditis elegans immune defenses.

PLoS Pathog. 2007;3(4):e57 - PMID: 17447841 - PMCID: PMC1853117 - DOI: 10.1371/journal.ppat.0030057
Klein MB, Hayden D, Elson C, Nathens AB, Gamelli RL, Gibran NS, Herndon DN, Arnoldo B, Silver G, Schoenfeld D, Tompkins RG

The association between fluid administration and outcome following major burn: a multicenter study.

Ann Surg. 2007;245(4):622-8 - PMID: 17414612 - PMCID: PMC1877030 - DOI: 10.1097/01.sla.0000252572.50684.49
Hayes GD, Ruvkun G

Misexpression of the Caenorhabditis elegans miRNA let-7 is sufficient to drive developmental programs.

Cold Spring Harb Symp Quant Biol. 2007;71:21-7 - PMID: 17381276 - DOI: 10.1101/sqb.2006.71.018
Ferrari S, Galletti R, Denoux C, De Lorenzo G, Ausubel FM, Dewdney J

Resistance to Botrytis cinerea induced in Arabidopsis by elicitors is independent of salicylic acid, ethylene, or jasmonate signaling but requires PHYTOALEXIN DEFICIENT3.

Plant Physiol. 2007;144(1):367-79 - PMID: 17384165 - PMCID: PMC1913806 - DOI: 10.1104/pp.107.095596
Silver GM, Klein MB, Herndon DN, Gamelli RL, Gibran NS, Altstein L, McDonald-Smith GP, Tompkins RG, Hunt JL,

Standard operating procedures for the clinical management of patients enrolled in a prospective study of Inflammation and the Host Response to Thermal Injury.

J Burn Care Res. 2007;28(2):222-30 - PMID: 17351437 - DOI: 10.1097/BCR.0B013E318031AA44
Sheen J, He P

Nuclear actions in innate immune signaling.

Cell. 2007;128(5):821-3 - PMID: 17350565 - DOI: 10.1016/j.cell.2007.02.019
Cho YH, Yoo SD, Sheen J

Glucose signaling through nuclear hexokinase1 complex in Arabidopsis.

Plant Signal Behav. 2007;2(2):123-4 - PMID: 19704756 - PMCID: PMC2633915 - DOI: 10.4161/psb.2.2.3894
Nathens AB, McMurray MK, Cuschieri J, Durr EA, Moore EE, Bankey PE, Freeman B, Harbrecht BG, Johnson JL, Minei JP, McKinley BA, Moore FA, Shapiro MB, West MA, Tompkins RG, Maier RV

The practice of venous thromboembolism prophylaxis in the major trauma patient.

J Trauma. 2007;62(3):557-62; discussion 562-3 - PMID: 17414328 - DOI: 10.1097/TA.0b013e318031b5f5
Giesecke AV, Joung JK

The bacterial two-hybrid system as a reporter system for analyzing protein-protein interactions.

CSH Protoc. 2007;2007:pdb.prot4672 - PMID: 21357036 - DOI: 10.1101/pdb.prot4672
Curran SP, Ruvkun G

Lifespan regulation by evolutionarily conserved genes essential for viability.

PLoS Genet. 2007;3(4):e56 - PMID: 17411345 - PMCID: PMC1847696 - DOI: 10.1371/journal.pgen.0030056
Meena , Sam M, Pierce K, Szostak JW, McLaughlin LW

2',3'-Dideoxy-3'-thionucleoside triphosphates: syntheses and polymerase substrate activities.

Org Lett. 2007;9(6):1161-3 - PMID: 17319676 - DOI: 10.1021/ol070147w
Kiss RS, Kavaslar N, Okuhira K, Freeman MW, Walter S, Milne RW, McPherson R, Marcel YL

Genetic etiology of isolated low HDL syndrome: incidence and heterogeneity of efflux defects.

Arterioscler Thromb Vasc Biol. 2007;27(5):1139-45 - PMID: 17303779 - DOI: 10.1161/ATVBAHA.106.137646
Gavi S, Stuart LM, Kelly P, Melendez MM, Mynarcik DC, Gelato MC, McNurlan MA

Retinol-binding protein 4 is associated with insulin resistance and body fat distribution in nonobese subjects without type 2 diabetes.

J Clin Endocrinol Metab. 2007;92(5):1886-90 - PMID: 17299074 - DOI: 10.1210/jc.2006-1815
Shakhnovich EA, Hung DT, Pierson E, Lee K, Mekalanos JJ

Virstatin inhibits dimerization of the transcriptional activator ToxT.

Proc Natl Acad Sci U S A. 2007;104(7):2372-7 - PMID: 17283330 - PMCID: PMC1892951 - DOI: 10.1073/pnas.0611643104
Total: 2473