Publications for All Faculty

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Karve A, Rauh BL, Xia X, Kandasamy M, Meagher RB, Sheen J, Moore BD

Expression and evolutionary features of the hexokinase gene family in Arabidopsis.

Planta. 2008;228(3):411-25 - PMID: 18481082 - PMCID: PMC2953952 - DOI: 10.1007/s00425-008-0746-9
Müller B, Sheen J

Cytokinin and auxin interaction in root stem-cell specification during early embryogenesis.

Nature. 2008;453(7198):1094-7 - PMID: 18463635 - PMCID: PMC2601652 - DOI: 10.1038/nature06943
Simon DJ, Madison JM, Conery AL, Thompson-Peer KL, Soskis M, Ruvkun GB, Kaplan JM, Kim JK

The microRNA miR-1 regulates a MEF-2-dependent retrograde signal at neuromuscular junctions.

Cell. 2008;133(5):903-15 - PMID: 18510933 - PMCID: PMC2553566 - DOI: 10.1016/j.cell.2008.04.035
Ramirez CL, Foley JE, Wright DA, Müller-Lerch F, Rahman SH, Cornu TI, Winfrey RJ, Sander JD, Fu F, Townsend JA, Cathomen T, Voytas DF, Joung JK

Unexpected failure rates for modular assembly of engineered zinc fingers.

Nat Methods. 2008;5(5):374-5 - PMID: 18446154 - PMCID: PMC7880305 - DOI: 10.1038/nmeth0508-374
Cabral CB, Bullock KH, Bischoff DJ, Tompkins RG, Yu YM, Kelleher JK

Estimating glutathione synthesis with deuterated water: a model for peptide biosynthesis.

Anal Biochem. 2008;379(1):40-4 - PMID: 18486587 - PMCID: PMC4065382 - DOI: 10.1016/j.ab.2008.04.042
Gabel HW, Ruvkun G

The exonuclease ERI-1 has a conserved dual role in 5.8S rRNA processing and RNAi.

Nat Struct Mol Biol. 2008;15(5):531-3 - PMID: 18438419 - PMCID: PMC2910399 - DOI: 10.1038/nsmb.1411
Seed B, Xavier R

Spinophilin and the immune synapse.

J Cell Biol. 2008;181(2):181-3 - PMID: 18411314 - PMCID: PMC2315665 - DOI: 10.1083/jcb.200803120
Subtelny AO, Hartman MC, Szostak JW

Ribosomal synthesis of N-methyl peptides.

J Am Chem Soc. 2008;130(19):6131-6 - PMID: 18402453 - PMCID: PMC2728122 - DOI: 10.1021/ja710016v
Liberati NT, Urbach JM, Thurber TK, Wu G, Ausubel FM

Comparing insertion libraries in two Pseudomonas aeruginosa strains to assess gene essentiality.

Methods Mol Biol. 2008;416:153-69 - PMID: 18392966 - DOI: 10.1007/978-1-59745-321-9_10
Zhang Q, Ma B, Fischman AJ, Tompkins RG, Carter EA

Increased uncoupling protein 1 mRNA expression in mice brown adipose tissue after burn injury.

J Burn Care Res. 2008;29(2):358-62 - PMID: 18354294 - DOI: 10.1097/BCR.0b013e318166739c
Zhang Q, Carter EA, Ma B, Fischman AJ, Tompkins RG

Burn-related metabolic and signaling changes in rat brain.

J Burn Care Res. 2008;29(2):346-52 - PMID: 18354292 - DOI: 10.1097/BCR.0b013e3181667387
Ketteler R, Sun Z, Kovacs KF, He WW, Seed B

A pathway sensor for genome-wide screens of intracellular proteolytic cleavage.

Genome Biol. 2008;9(4):R64 - PMID: 18387192 - PMCID: PMC2643935 - DOI: 10.1186/gb-2008-9-4-r64
Russom A, Sethu P, Irimia D, Mindrinos MN, Calvano SE, Garcia I, Finnerty C, Tannahill C, Abouhamze A, Wilhelmy J, López MC, Baker HV, Herndon DN, Lowry SF, Maier RV, Davis RW, Moldawer LL, Tompkins RG, Toner M,

Microfluidic leukocyte isolation for gene expression analysis in critically ill hospitalized patients.

Clin Chem. 2008;54(5):891-900 - PMID: 18375483 - PMCID: PMC4011019 - DOI: 10.1373/clinchem.2007.099150
Powell JR, Ausubel FM

Models of Caenorhabditis elegans infection by bacterial and fungal pathogens.

Methods Mol Biol. 2008;415:403-27 - PMID: 18370168 - DOI: 10.1007/978-1-59745-570-1_24
Schöbel S, Neumann S, Hertweck M, Dislich B, Kuhn PH, Kremmer E, Seed B, Baumeister R, Haass C, Lichtenthaler SF

A novel sorting nexin modulates endocytic trafficking and alpha-secretase cleavage of the amyloid precursor protein.

J Biol Chem. 2008;283(21):14257-68 - PMID: 18353773 - DOI: 10.1074/jbc.M801531200
Pruett-Miller SM, Connelly JP, Maeder ML, Joung JK, Porteus MH

Comparison of zinc finger nucleases for use in gene targeting in mammalian cells.

Mol Ther. 2008;16(4):707-17 - PMID: 18334988 - DOI: 10.1038/mt.2008.20
Thibodeau-Beganny S, Joung JK

Engineering Cys2His2 zinc finger domains using a bacterial cell-based two-hybrid selection system.

Methods Mol Biol. 2008;408:317-34 - PMID: 18314590 - DOI: 10.1007/978-1-59745-547-3_17
Duerr EM, Mizukami Y, Ng A, Xavier RJ, Kikuchi H, Deshpande V, Warshaw AL, Glickman J, Kulke MH, Chung DC

Defining molecular classifications and targets in gastroenteropancreatic neuroendocrine tumors through DNA microarray analysis.

Endocr Relat Cancer. 2008;15(1):243-56 - PMID: 18310291 - DOI: 10.1677/ERC-07-0194
Sims KB, Pastores GM, Weinreb NJ, Barranger J, Rosenbloom BE, Packman S, Kaplan P, Mankin H, Xavier R, Angell J, Fitzpatrick MA, Rosenthal D

Improvement of bone disease by imiglucerase (Cerezyme) therapy in patients with skeletal manifestations of type 1 Gaucher disease: results of a 48-month longitudinal cohort study.

Clin Genet. 2008;73(5):430-40 - PMID: 18312448 - PMCID: PMC2440418 - DOI: 10.1111/j.1399-0004.2008.00978.x
Di Carlo D, Edd JF, Irimia D, Tompkins RG, Toner M

Equilibrium separation and filtration of particles using differential inertial focusing.

Anal Chem. 2008;80(6):2204-11 - PMID: 18275222 - DOI: 10.1021/ac702283m
Xavier RJ, Huett A, Rioux JD

Autophagy as an important process in gut homeostasis and Crohn's disease pathogenesis.

Gut. 2008;57(6):717-20 - PMID: 18272545 - PMCID: PMC2735854 - DOI: 10.1136/gut.2007.134254
Monnard PA, Szostak JW

Metal-ion catalyzed polymerization in the eutectic phase in water-ice: a possible approach to template-directed RNA polymerization.

J Inorg Biochem. 2008;102(5-6):1104-11 - PMID: 18329104 - DOI: 10.1016/j.jinorgbio.2008.01.026
Miyata S, Begun J, Troemel ER, Ausubel FM

DAF-16-dependent suppression of immunity during reproduction in Caenorhabditis elegans.

Genetics. 2008;178(2):903-18 - PMID: 18245330 - PMCID: PMC2248360 - DOI: 10.1534/genetics.107.083923
Toner M, Tompkins RG

Invention, innovation, entrepreneurship in academic medical centers.

Surgery. 2008;143(2):168-71 - PMID: 18242329 - PMCID: PMC2408552 - DOI: 10.1016/j.surg.2007.11.004
Stuart LM, Ezekowitz RA

Phagocytosis and comparative innate immunity: learning on the fly.

Nat Rev Immunol. 2008;8(2):131-41 - PMID: 18219310 - DOI: 10.1038/nri2240
Total: 2468