Publications for All Faculty

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Freeman RM, Wu M, Cordonnier-Pratt MM, Pratt LH, Gruber CE, Smith M, Lander ES, Stange-Thomann N, Lowe CJ, Gerhart J, Kirschner M

cDNA sequences for transcription factors and signaling proteins of the hemichordate Saccoglossus kowalevskii: efficacy of the expressed sequence tag (EST) approach for evolutionary and developmental studies of a new organism.

Biol Bull. 2008;214(3):284-302 - PMID: 18574105 - DOI: 10.2307/25470670
Denoux C, Galletti R, Mammarella N, Gopalan S, Werck D, De Lorenzo G, Ferrari S, Ausubel FM, Dewdney J

Activation of defense response pathways by OGs and Flg22 elicitors in Arabidopsis seedlings.

Mol Plant. 2008;1(3):423-45 - PMID: 19825551 - PMCID: PMC2954645 - DOI: 10.1093/mp/ssn019
Patel DS, Fang LL, Svy DK, Ruvkun G, Li W

Genetic identification of HSD-1, a conserved steroidogenic enzyme that directs larval development in Caenorhabditis elegans.

Development. 2008;135(13):2239-49 - PMID: 18495818 - DOI: 10.1242/dev.016972
Tamehiro N, Zhou S, Okuhira K, Benita Y, Brown CE, Zhuang DZ, Latz E, Hornemann T, von Eckardstein A, Xavier RJ, Freeman MW, Fitzgerald ML

SPTLC1 binds ABCA1 to negatively regulate trafficking and cholesterol efflux activity of the transporter.

Biochemistry. 2008;47(23):6138-47 - PMID: 18484747 - PMCID: PMC2504083 - DOI: 10.1021/bi800182t
Huett A, Xavier RJ

Neither hide nor hair: the difficulty of identifying useful disease biomarkers.

Gastroenterology. 2008;134(7):2164-8 - PMID: 18486617 - DOI: 10.1053/j.gastro.2008.04.013
Karve A, Rauh BL, Xia X, Kandasamy M, Meagher RB, Sheen J, Moore BD

Expression and evolutionary features of the hexokinase gene family in Arabidopsis.

Planta. 2008;228(3):411-25 - PMID: 18481082 - PMCID: PMC2953952 - DOI: 10.1007/s00425-008-0746-9
Müller B, Sheen J

Cytokinin and auxin interaction in root stem-cell specification during early embryogenesis.

Nature. 2008;453(7198):1094-7 - PMID: 18463635 - PMCID: PMC2601652 - DOI: 10.1038/nature06943
Simon DJ, Madison JM, Conery AL, Thompson-Peer KL, Soskis M, Ruvkun GB, Kaplan JM, Kim JK

The microRNA miR-1 regulates a MEF-2-dependent retrograde signal at neuromuscular junctions.

Cell. 2008;133(5):903-15 - PMID: 18510933 - PMCID: PMC2553566 - DOI: 10.1016/j.cell.2008.04.035
Ramirez CL, Foley JE, Wright DA, Müller-Lerch F, Rahman SH, Cornu TI, Winfrey RJ, Sander JD, Fu F, Townsend JA, Cathomen T, Voytas DF, Joung JK

Unexpected failure rates for modular assembly of engineered zinc fingers.

Nat Methods. 2008;5(5):374-5 - PMID: 18446154 - PMCID: PMC7880305 - DOI: 10.1038/nmeth0508-374
Cabral CB, Bullock KH, Bischoff DJ, Tompkins RG, Yu YM, Kelleher JK

Estimating glutathione synthesis with deuterated water: a model for peptide biosynthesis.

Anal Biochem. 2008;379(1):40-4 - PMID: 18486587 - PMCID: PMC4065382 - DOI: 10.1016/j.ab.2008.04.042
Gabel HW, Ruvkun G

The exonuclease ERI-1 has a conserved dual role in 5.8S rRNA processing and RNAi.

Nat Struct Mol Biol. 2008;15(5):531-3 - PMID: 18438419 - PMCID: PMC2910399 - DOI: 10.1038/nsmb.1411
Seed B, Xavier R

Spinophilin and the immune synapse.

J Cell Biol. 2008;181(2):181-3 - PMID: 18411314 - PMCID: PMC2315665 - DOI: 10.1083/jcb.200803120
Subtelny AO, Hartman MC, Szostak JW

Ribosomal synthesis of N-methyl peptides.

J Am Chem Soc. 2008;130(19):6131-6 - PMID: 18402453 - PMCID: PMC2728122 - DOI: 10.1021/ja710016v
Liberati NT, Urbach JM, Thurber TK, Wu G, Ausubel FM

Comparing insertion libraries in two Pseudomonas aeruginosa strains to assess gene essentiality.

Methods Mol Biol. 2008;416:153-69 - PMID: 18392966 - DOI: 10.1007/978-1-59745-321-9_10
Zhang Q, Ma B, Fischman AJ, Tompkins RG, Carter EA

Increased uncoupling protein 1 mRNA expression in mice brown adipose tissue after burn injury.

J Burn Care Res. 2008;29(2):358-62 - PMID: 18354294 - DOI: 10.1097/BCR.0b013e318166739c
Zhang Q, Carter EA, Ma B, Fischman AJ, Tompkins RG

Burn-related metabolic and signaling changes in rat brain.

J Burn Care Res. 2008;29(2):346-52 - PMID: 18354292 - DOI: 10.1097/BCR.0b013e3181667387
Ketteler R, Sun Z, Kovacs KF, He WW, Seed B

A pathway sensor for genome-wide screens of intracellular proteolytic cleavage.

Genome Biol. 2008;9(4):R64 - PMID: 18387192 - PMCID: PMC2643935 - DOI: 10.1186/gb-2008-9-4-r64
Russom A, Sethu P, Irimia D, Mindrinos MN, Calvano SE, Garcia I, Finnerty C, Tannahill C, Abouhamze A, Wilhelmy J, López MC, Baker HV, Herndon DN, Lowry SF, Maier RV, Davis RW, Moldawer LL, Tompkins RG, Toner M,

Microfluidic leukocyte isolation for gene expression analysis in critically ill hospitalized patients.

Clin Chem. 2008;54(5):891-900 - PMID: 18375483 - PMCID: PMC4011019 - DOI: 10.1373/clinchem.2007.099150
Powell JR, Ausubel FM

Models of Caenorhabditis elegans infection by bacterial and fungal pathogens.

Methods Mol Biol. 2008;415:403-27 - PMID: 18370168 - DOI: 10.1007/978-1-59745-570-1_24
Schöbel S, Neumann S, Hertweck M, Dislich B, Kuhn PH, Kremmer E, Seed B, Baumeister R, Haass C, Lichtenthaler SF

A novel sorting nexin modulates endocytic trafficking and alpha-secretase cleavage of the amyloid precursor protein.

J Biol Chem. 2008;283(21):14257-68 - PMID: 18353773 - DOI: 10.1074/jbc.M801531200
Pruett-Miller SM, Connelly JP, Maeder ML, Joung JK, Porteus MH

Comparison of zinc finger nucleases for use in gene targeting in mammalian cells.

Mol Ther. 2008;16(4):707-17 - PMID: 18334988 - DOI: 10.1038/mt.2008.20
Thibodeau-Beganny S, Joung JK

Engineering Cys2His2 zinc finger domains using a bacterial cell-based two-hybrid selection system.

Methods Mol Biol. 2008;408:317-34 - PMID: 18314590 - DOI: 10.1007/978-1-59745-547-3_17
Duerr EM, Mizukami Y, Ng A, Xavier RJ, Kikuchi H, Deshpande V, Warshaw AL, Glickman J, Kulke MH, Chung DC

Defining molecular classifications and targets in gastroenteropancreatic neuroendocrine tumors through DNA microarray analysis.

Endocr Relat Cancer. 2008;15(1):243-56 - PMID: 18310291 - DOI: 10.1677/ERC-07-0194
Sims KB, Pastores GM, Weinreb NJ, Barranger J, Rosenbloom BE, Packman S, Kaplan P, Mankin H, Xavier R, Angell J, Fitzpatrick MA, Rosenthal D

Improvement of bone disease by imiglucerase (Cerezyme) therapy in patients with skeletal manifestations of type 1 Gaucher disease: results of a 48-month longitudinal cohort study.

Clin Genet. 2008;73(5):430-40 - PMID: 18312448 - PMCID: PMC2440418 - DOI: 10.1111/j.1399-0004.2008.00978.x
Di Carlo D, Edd JF, Irimia D, Tompkins RG, Toner M

Equilibrium separation and filtration of particles using differential inertial focusing.

Anal Chem. 2008;80(6):2204-11 - PMID: 18275222 - DOI: 10.1021/ac702283m
Total: 2473