Publications for All Faculty

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Warren HS, Elson CM, Hayden DL, Schoenfeld DA, Cobb JP, Maier RV, Moldawer LL, Moore EE, Harbrecht BG, Pelak K, Cuschieri J, Herndon DN, Jeschke MG, Finnerty CC, Brownstein BH, Hennessy L, Mason PH, Tompkins RG,

A genomic score prognostic of outcome in trauma patients.

Mol Med. 2009;15(7-8):220-7 - PMID: 19593405 - PMCID: PMC2707513 - DOI: 10.2119/molmed.2009.00027
Tran C, Ouk S, Clegg NJ, Chen Y, Watson PA, Arora V, Wongvipat J, Smith-Jones PM, Yoo D, Kwon A, Wasielewska T, Welsbie D, Chen CD, Higano CS, Beer TM, Hung DT, Scher HI, Jung ME, Sawyers CL

Development of a second-generation antiandrogen for treatment of advanced prostate cancer.

Science. 2009;324(5928):787-90 - PMID: 19359544 - PMCID: PMC2981508 - DOI: 10.1126/science.1168175
Zhu TF, Szostak JW

Preparation of large monodisperse vesicles.

PLoS One. 2009;4(4):e5009 - PMID: 19347043 - PMCID: PMC2661144 - DOI: 10.1371/journal.pone.0005009
Yin HN, Chai JK, Yu YM, Shen CA, Wu YQ, Yao YM, Liu H, Liang LM, Tompkins RG, Sheng ZY

Regulation of signaling pathways downstream of IGF-I/insulin by androgen in skeletal muscle of glucocorticoid-treated rats.

J Trauma. 2009;66(4):1083-90 - PMID: 19359918 - PMCID: PMC4085982 - DOI: 10.1097/TA.0b013e31817e7420
Urbach JM, Wei T, Liberati N, Grenfell-Lee D, Villanueva J, Wu G, Ausubel FM

Using PATIMDB to create bacterial transposon insertion mutant libraries.

Curr Protoc Mol Biol. 2009;Chapter 19:Unit 19.7 - PMID: 19343706 - PMCID: PMC4492697 - DOI: 10.1002/0471142727.mb1907s86
Huett A, Ng A, Cao Z, Kuballa P, Komatsu M, Daly MJ, Podolsky DK, Xavier RJ

A novel hybrid yeast-human network analysis reveals an essential role for FNBP1L in antibacterial autophagy.

J Immunol. 2009;182(8):4917-30 - PMID: 19342671 - PMCID: PMC2752416 - DOI: 10.4049/jimmunol.0803050
Zhu TF, Szostak JW

Coupled growth and division of model protocell membranes.

J Am Chem Soc. 2009;131(15):5705-13 - PMID: 19323552 - PMCID: PMC2669828 - DOI: 10.1021/ja900919c
Chen JJ, Tsai CH, Cai X, Horhota AT, McLaughlin LW, Szostak JW

Enzymatic primer-extension with glycerol-nucleoside triphosphates on DNA templates.

PLoS One. 2009;4(3):e4949 - PMID: 19305495 - PMCID: PMC2654545 - DOI: 10.1371/journal.pone.0004949
Adams JC, Seed B, Lu N, Landry A, Xavier RJ

Selective activation of nuclear factor kappa B in the cochlea by sensory and inflammatory stress.

Neuroscience. 2009;160(2):530-9 - PMID: 19285117 - PMCID: PMC2673023 - DOI: 10.1016/j.neuroscience.2009.02.073
Adams JC, Seed B, Lu N, Landry A, Xavier RJ

Selective activation of nuclear factor kappa B in the cochlea by sensory and inflammatory stress.

Neuroscience. 2009;160(2):530-9 - PMID: 19285117 - PMCID: PMC2673023 - DOI: 10.1016/j.neuroscience.2009.02.073
Tai AW, Benita Y, Peng LF, Kim SS, Sakamoto N, Xavier RJ, Chung RT

A functional genomic screen identifies cellular cofactors of hepatitis C virus replication.

Cell Host Microbe. 2009;5(3):298-307 - PMID: 19286138 - PMCID: PMC2756022 - DOI: 10.1016/j.chom.2009.02.001
Foley JE, Yeh JR, Maeder ML, Reyon D, Sander JD, Peterson RT, Joung JK

Rapid mutation of endogenous zebrafish genes using zinc finger nucleases made by Oligomerized Pool ENgineering (OPEN).

PLoS One. 2009;4(2):e4348 - PMID: 19198653 - PMCID: PMC2634973 - DOI: 10.1371/journal.pone.0004348
Festen EA, Goyette P, Scott R, Annese V, Zhernakova A, Lian J, Lefèbvre C, Brant SR, Cho JH, Silverberg MS, Taylor KD, de Jong DJ, Stokkers PC, Mcgovern D, Palmieri O, Achkar JP, Xavier RJ, Daly MJ, Duerr RH, Wijmenga C, Weersma RK, Rioux JD

Genetic variants in the region harbouring IL2/IL21 associated with ulcerative colitis.

Gut. 2009;58(6):799-804 - PMID: 19201773 - PMCID: PMC2757103 - DOI: 10.1136/gut.2008.166918
Powell JR, Kim DH, Ausubel FM

The G protein-coupled receptor FSHR-1 is required for the Caenorhabditis elegans innate immune response.

Proc Natl Acad Sci U S A. 2009;106(8):2782-7 - PMID: 19196974 - PMCID: PMC2650343 - DOI: 10.1073/pnas.0813048106
Cheng X, Gupta A, Chen C, Tompkins RG, Rodriguez W, Toner M

Enhancing the performance of a point-of-care CD4+ T-cell counting microchip through monocyte depletion for HIV/AIDS diagnostics.

Lab Chip. 2009;9(10):1357-64 - PMID: 19417901 - PMCID: PMC4064257 - DOI: 10.1039/b818813k
Soukas AA, Kane EA, Carr CE, Melo JA, Ruvkun G

Rictor/TORC2 regulates fat metabolism, feeding, growth, and life span in Caenorhabditis elegans.

Genes Dev. 2009;23(4):496-511 - PMID: 19240135 - PMCID: PMC2648650 - DOI: 10.1101/gad.1775409
Chen JJ, Cai X, Szostak JW

N2'-->p3' phosphoramidate glycerol nucleic acid as a potential alternative genetic system.

J Am Chem Soc. 2009;131(6):2119-21 - PMID: 19166350 - PMCID: PMC2722806 - DOI: 10.1021/ja809069b
Imamura T, Kikuchi H, Herraiz MT, Park DY, Mizukami Y, Mino-Kenduson M, Lynch MP, Rueda BR, Benita Y, Xavier RJ, Chung DC

HIF-1alpha and HIF-2alpha have divergent roles in colon cancer.

Int J Cancer. 2009;124(4):763-71 - PMID: 19030186 - PMCID: PMC2682346 - DOI: 10.1002/ijc.24032
Chandran D, Tai YC, Hather G, Dewdney J, Denoux C, Burgess DG, Ausubel FM, Speed TP, Wildermuth MC

Temporal global expression data reveal known and novel salicylate-impacted processes and regulators mediating powdery mildew growth and reproduction on Arabidopsis.

Plant Physiol. 2009;149(3):1435-51 - PMID: 19176722 - PMCID: PMC2649394 - DOI: 10.1104/pp.108.132985
Butcher RA, Ragains JR, Li W, Ruvkun G, Clardy J, Mak HY

Biosynthesis of the Caenorhabditis elegans dauer pheromone.

Proc Natl Acad Sci U S A. 2009;106(6):1875-9 - PMID: 19174521 - PMCID: PMC2631283 - DOI: 10.1073/pnas.0810338106
Huett A, McCarroll SA, Daly MJ, Xavier RJ

On the level: IRGM gene function is all about expression.

Autophagy. 2009;5(1):96-9 - PMID: 19029815 - PMCID: PMC3204672 - DOI: 10.4161/auto.5.1.7263
Clatworthy AE, Lee JS, Leibman M, Kostun Z, Davidson AJ, Hung DT

Pseudomonas aeruginosa infection of zebrafish involves both host and pathogen determinants.

Infect Immun. 2009;77(4):1293-303 - PMID: 19168742 - PMCID: PMC2663173 - DOI: 10.1128/IAI.01181-08
Neely AN, Gardner J, Durkee P, Warden GD, Greenhalgh DG, Gallagher JJ, Herndon DN, Tompkins RG, Kagan RJ

Are topical antimicrobials effective against bacteria that are highly resistant to systemic antibiotics?

J Burn Care Res. 2009;30(1):19-29 - PMID: 19060725 - DOI: 10.1097/BCR.0b013e3181921eed
Medoff BD, Sandall BP, Landry A, Nagahama K, Mizoguchi A, Luster AD, Xavier RJ

Differential requirement for CARMA1 in agonist-selected T-cell development.

Eur J Immunol. 2009;39(1):78-84 - PMID: 19130560 - PMCID: PMC2747028 - DOI: 10.1002/eji.200838734
Qian WJ, Liu T, Petyuk VA, Gritsenko MA, Petritis BO, Polpitiya AD, Kaushal A, Xiao W, Finnerty CC, Jeschke MG, Jaitly N, Monroe ME, Moore RJ, Moldawer LL, Davis RW, Tompkins RG, Herndon DN, Camp DG, Smith RD,

Large-scale multiplexed quantitative discovery proteomics enabled by the use of an (18)O-labeled "universal" reference sample.

J Proteome Res. 2009;8(1):290-9 - PMID: 19053531 - PMCID: PMC2752204 - DOI: 10.1021/pr800467r
Total: 2477