Publications for All Faculty

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Hipp J, Monaco J, Kunju LP, Cheng J, Yagi Y, Rodriguez-Canales J, Emmert-Buck MR, Hewitt S, Feldman MD, Tomaszewski JE, Toner M, Tompkins RG, Flotte T, Lucas D, Gilbertson JR, Madabhushi A, Balis U

Integration of architectural and cytologic driven image algorithms for prostate adenocarcinoma identification.
Anal Cell Pathol (Amst). 2012;35(4):251-65 - PMID: 22425661 - PMCID: PMC4605585 - DOI: 10.3233/ACP-2012-0054

Li JF, Sheen J

DNA purification from multiple sources in plant research with homemade silica resins.
Methods Mol Biol. 2012;862:53-9 - PMID: 22419488 - DOI: 10.1007/978-1-61779-609-8_5

Xu H, Yu YM, Ma H, Carter EA, Fagan S, Tompkins RG, Fischman AJ

Glucose metabolism during the early after burn injury.
J Surg Res. 2013;179(1):e83-90 - PMID: 22459295 - PMCID: PMC4074901 - DOI: 10.1016/j.jss.2012.02.037

Wu X, Shi Z, Cui M, Han M, Ruvkun G

Repression of Germline RNAi Pathways in Somatic Cells by Retinoblastoma Pathway Chromatin Complexes.
PLoS Genet. 2012;8(3):e1002542 - PMID: 22412383 - PMCID: PMC3297578 - DOI: 10.1371/journal.pgen.1002542

Shi Z, Ruvkun G

The mevalonate pathway regulates microRNA activity in Caenorhabditis elegans.
Proc Natl Acad Sci U S A. 2012;109(12):4568-73 - PMID: 22396595 - PMCID: PMC3311396 - DOI: 10.1073/pnas.1202421109

Hamrahi VF, Goverman J, Jung W, Wu JC, Fischman AJ, Tompkins RG, Yu YY, Fagan SP, Carter EA

In Vivo Molecular Imaging of Murine Embryonic Stem Cells Delivered to a Burn Wound Surface via Integra® Scaffolding.
J Burn Care Res. 2012;33(2):e49-54 - PMID: 22441149 - PMCID: PMC3311992

Duerr EM, Mizukami Y, Moriichi K, Gala M, Jo WS, Kikuchi H, Xavier RJ, Chung DC

ONCOGENIC KRAS REGULATES BMP4 EXPRESSION IN COLON CANCER CELL LINES.
Am J Physiol Gastrointest Liver Physiol. 2012;302(10):G1223-30 - PMID: 22383492 - PMCID: PMC3362092 - DOI: 10.1152/ajpgi.00047.2011

Ramirez CL, Certo MT, Mussolino C, Goodwin MJ, Cradick TJ, McCaffrey AP, Cathomen T, Scharenberg AM, Joung JK

Engineered zinc finger nickases induce homology-directed repair with reduced mutagenic effects.
Nucleic Acids Res. 2012;40(12):5560-8 - PMID: 22373919 - PMCID: PMC3384306 - DOI: 10.1093/nar/gks179

O'Brien JA, Daudi A, Finch P, Butt VS, Whitelegge JP, Souda P, Ausubel FM, Bolwell GP

A Peroxidase-Dependent Apoplastic Oxidative Burst in Cultured Arabidopsis Cells Functions in MAMP-Elicited Defense.
Plant Physiol. 2012;158(4):2013-27 - PMID: 22319074 - PMCID: PMC3320203 - DOI: 10.1104/pp.111.190140

Grad YH, Lipsitch M, Feldgarden M, Arachchi HM, Cerqueira GC, Fitzgerald M, Godfrey P, Haas BJ, Murphy CI, Russ C, Sykes S, Walker BJ, Wortman JR, Young S, Zeng Q, Abouelleil A, Bochicchio J, Chauvin S, Desmet T, Gujja S, McCowan C, Montmayeur A, Steelman S, Frimodt-Møller J, Petersen AM, Struve C, Krogfelt KA, Bingen E, Weill FX, Lander ES, Nusbaum C, Birren BW, Hung DT, Hanage WP

Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011.
Proc Natl Acad Sci U S A. 2012;109(8):3065-70 - PMID: 22315421 - PMCID: PMC3286951 - DOI: 10.1073/pnas.1121491109

Zhang N, Zhang S, Szostak JW

Activated ribonucleotides undergo a sugar pucker switch upon binding to a single-stranded RNA template.
J Am Chem Soc. 2012;134(8):3691-4 - PMID: 22296305 - PMCID: PMC3448298 - DOI: 10.1021/ja212027q

Jeschke MG, Finnerty CC, Herndon DN, Song J, Boehning D, Tompkins RG, Baker HV, Gauglitz GG

Severe injury is associated with insulin resistance, endoplasmic reticulum stress response, and unfolded protein response.
Ann Surg. 2012;255(2):370-8 - PMID: 22241293 - PMCID: PMC3395076 - DOI: 10.1097/SLA.0b013e31823e76e7

Szostak JW

Attempts to define life do not help to understand the origin of life.
J Biomol Struct Dyn. 2012;29(4):599-600 - PMID: 22208251 - PMCID: PMC4208307 - DOI: 10.1080/073911012010524998

Tompkins RG

Survival of children with burn injuries.
Lancet. 2012;379(9820):983-4 - PMID: 22296811 - PMCID: PMC4019221 - DOI: 10.1016/S0140-6736(11)61626-7

Song J, Finnerty CC, Herndon DN, Kraft R, Boehning D, Brooks NC, Tompkins RG, Jeschke MG

Thermal Injury Activates eEF2k-Dependent eEF2 Pathway in Pediatric Patients.
JPEN J Parenter Enteral Nutr. 2012;36(5):596-602 - PMID: 22269896 - PMCID: PMC3580832 - DOI: 10.1177/0148607111422234

Wei SC, Rosenberg IM, Cao Z, Huett AS, Xavier RJ, Podolsky DK

Tribbles 2 (Trib2) is a novel regulator of toll-like receptor 5 signaling.
Inflamm Bowel Dis. 2012;18(5):877-88 - PMID: 22271508 - PMCID: PMC3881418 - DOI: 10.1002/ibd.22883

Cui HL, Grant A, Mukhamedova N, Pushkarsky T, Jennelle L, Dubrovsky L, Gaus K, Fitzgerald ML, Sviridov D, Bukrinsky M

HIV-1 Nef mobilizes lipid rafts in macrophages through a pathway that competes with ABCA1-dependent cholesterol efflux.
J Lipid Res. 2012;53(4):696-708 - PMID: 22262807 - PMCID: PMC3307646 - DOI: 10.1194/jlr.M023119

Gewurz BE, Towfic F, Mar JC, Shinners NP, Takasaki K, Zhao B, Cahir-McFarland ED, Quackenbush J, Xavier RJ, Kieff E

Genome-wide siRNA screen for mediators of NF-?B activation.
Proc Natl Acad Sci U S A. 2012;109(7):2467-72 - PMID: 22308454 - PMCID: PMC3289371 - DOI: 10.1073/pnas.1120542109

Daudi A, Cheng Z, O'Brien JA, Mammarella N, Khan S, Ausubel FM, Bolwell GP

The apoplastic oxidative burst peroxidase in Arabidopsis is a major component of pattern-triggered immunity.
Plant Cell. 2012;24(1):275-87 - PMID: 22247251 - PMCID: PMC3289579 - DOI: 10.1105/tpc.111.093039

Pukkila-Worley R, Ausubel FM

Immune defense mechanisms in the Caenorhabditis elegans intestinal epithelium.
Curr Opin Immunol. 2012;24(1):3-9 - PMID: 22236697 - PMCID: PMC3660727 - DOI: 10.1016/j.coi.2011.10.004

van Gils JM, Derby MC, Fernandes LR, Ramkhelawon B, Ray TD, Rayner KJ, Parathath S, Distel E, Feig JL, Alvarez-Leite JI, Rayner AJ, McDonald TO, O'Brien KD, Stuart LM, Fisher EA, Lacy-Hulbert A, Moore KJ

The neuroimmune guidance cue netrin-1 promotes atherosclerosis by inhibiting the emigration of macrophages from plaques.
Nat Immunol. 2012;13(2):136-43 - PMID: 22231519 - PMCID: PMC3262880 - DOI: 10.1038/ni.2205

Weber JM, Sheridan RL, Fagan S, Ryan CM, Pasternack MS, Tompkins RG

Incidence of Catheter-Associated Bloodstream Infection After Introduction of Minocycline and Rifampin Antimicrobial-Coated Catheters in a Pediatric Burn Population.
J Burn Care Res. 2012;33(4):539-43 - PMID: 22210071 - DOI: 10.1097/BCR.0b013e31823c4cd5

Zhou L, Kawate T, Liu X, Kim YB, Zhao Y, Feng G, Banerji J, Nash H, Whitehurst C, Jindal S, Siddiqui A, Seed B, Wolfe JL

STAT6 phosphorylation inhibitors block eotaxin-3 secretion in bronchial epithelial cells.
Bioorg Med Chem. 2012;20(2):750-8 - PMID: 22217933 - DOI: 10.1016/j.bmc.2011.12.006

Lu XM, Tompkins RG, Fischman AJ

SILAM for quantitative proteomics of liver Akt1/PKB? after burn injury.
Int J Mol Med. 2012;29(3):461-71 - PMID: 22179310 - PMCID: PMC3981641 - DOI: 10.3892/ijmm.2011.861

Lee J, Kim HR, Quinley C, Kim J, Gonzalez-Navajas J, Xavier R, Raz E

Autophagy suppresses interleukin-1? (IL-1?) signaling by activation of p62 degradation via lysosomal and proteasomal pathways.
J Biol Chem. 2012;287(6):4033-40 - PMID: 22167182 - PMCID: PMC3281713 - DOI: 10.1074/jbc.M111.280065
Total: 2498