Publications for All Faculty

Sort by:

Schmidt Grant S, Kaufmann BB, Chand NS, Haseley N, Hung DT

Eradication of bacterial persisters with antibiotic-generated hydroxyl radicals.
Proc Natl Acad Sci U S A. 2012;109(30):12147-52 - PMID: 22778419 - PMCID: PMC3409745 - DOI: 10.1073/pnas.1203735109

Luhachack LG, Visvikis O, Wollenberg AC, Lacy-Hulbert A, Stuart LM, Irazoqui JE

EGL-9 Controls C. elegans Host Defense Specificity through Prolyl Hydroxylation-Dependent and -Independent HIF-1 Pathways.
PLoS Pathog. 2012;8(7):e1002798 - PMID: 22792069 - PMCID: PMC3390412 - DOI: 10.1371/journal.ppat.1002798

Yao Y, Danna CH, Ausubel FM, Kovalchuk I

Perception of volatiles produced by UVC-irradiated plants alters the response to viral infection in naïve neighboring plants.
Plant Signal Behav. 2012;7(7):741-5 - PMID: 22751319 - PMCID: PMC3583953 - DOI: 10.4161/psb.20406

Xavier RJ, Gala MK, Bronzo BK, Kelly PJ

Case 23-2012.
N Engl J Med. 2012;367(4):363-73 - PMID: 22830467 - DOI: 10.1056/NEJMcpc1109275

Papa E, Docktor M, Smillie C, Weber S, Preheim SP, Gevers D, Giannoukos G, Ciulla D, Tabbaa D, Ingram J, Schauer DB, Ward DV, Korzenik JR, Xavier RJ, Bousvaros A, Alm EJ

Non-invasive mapping of the gastrointestinal microbiota identifies children with inflammatory bowel disease.
PLoS One. 2012;7(6):e39242 - PMID: 22768065 - PMCID: PMC3387146 - DOI: 10.1371/journal.pone.0039242

Papa E, Docktor M, Smillie C, Weber S, Preheim SP, Gevers D, Giannoukos G, Ciulla D, Tabbaa D, Ingram J, Schauer DB, Ward DV, Korzenik JR, Xavier RJ, Bousvaros A, Alm EJ

Non-invasive mapping of the gastrointestinal microbiota identifies children with inflammatory bowel disease.
PLoS One. 2012;7(6):e39242 - PMID: 22768065 - PMCID: PMC3387146 - DOI: 10.1371/journal.pone.0039242

Su CW, Cao Y, Zhang M, Kaplan J, Su L, Fu Y, Walker WA, Xavier R, Cherayil BJ, Shi HN

Helminth Infection Impairs Autophagy-Mediated Killing of Bacterial Enteropathogens by Macrophages.
J Immunol. 2012;189(3):1459-66 - PMID: 22732589 - PMCID: PMC3423331 - DOI: 10.4049/jimmunol.1200484

Phillips CM, Montgomery TA, Breen PC, Ruvkun G

MUT-16 promotes formation of perinuclear Mutator foci required for RNA silencing in the C. elegans germline.
Genes Dev. 2012;26(13):1433-44 - PMID: 22713602 - PMCID: PMC3403012 - DOI: 10.1101/gad.193904.112

Pukkila-Worley R, Feinbaum R, Kirienko NV, Larkins-Ford J, Conery AL, Ausubel FM

Stimulation of Host Immune Defenses by a Small Molecule Protects C. elegans from Bacterial Infection.
PLoS Genet. 2012;8(6):e1002733 - PMID: 22719261 - PMCID: PMC3375230 - DOI: 10.1371/journal.pgen.1002733

Human Microbiome Project Consortium

A framework for human microbiome research.
Nature. 2012;486(7402):215-21 - PMID: 22699610 - PMCID: PMC3377744 - DOI: 10.1038/nature11209

Human Microbiome Project Consortium

Structure, function and diversity of the healthy human microbiome.
Nature. 2012;486(7402):207-14 - PMID: 22699609 - PMCID: PMC3564958 - DOI: 10.1038/nature11234

Cade L, Reyon D, Hwang WY, Tsai SQ, Patel S, Khayter C, Joung JK, Sander JD, Peterson RT, Yeh JR

Highly efficient generation of heritable zebrafish gene mutations using homo- and heterodimeric TALENs.
Nucleic Acids Res. 2012;40(16):8001-10 - PMID: 22684503 - PMCID: PMC3439908 - DOI: 10.1093/nar/gks518

Zhu TF, Adamala K, Zhang N, Szostak JW

Photochemically driven redox chemistry induces protocell membrane pearling and division.
Proc Natl Acad Sci U S A. 2012;109(25):9828-32 - PMID: 22665773 - PMCID: PMC3382484 - DOI: 10.1073/pnas.1203212109

Hwang I., Sheen J., Mueller B.

Cytokinin signaling networks
Annu Rev Plant Biology. . 2012;63:353-380

Sheen J

An interview with Jen Sheen.
Trends Plant Sci. 2012;17(6):321-2 - PMID: 22860262 - DOI: 10.1016/j.tplants.2012.03.006

Murad MH, Drake MT, Mullan RJ, Mauck KF, Stuart LM, Lane MA, Abu Elnour NO, Erwin PJ, Hazem A, Puhan MA, Li T, Montori VM

Clinical review. Comparative effectiveness of drug treatments to prevent fragility fractures: a systematic review and network meta-analysis.
J Clin Endocrinol Metab. 2012;97(6):1871-80 - PMID: 22466336 - DOI: 10.1210/jc.2011-3060

Moore FE, Reyon D, Sander JD, Martinez SA, Blackburn JS, Khayter C, Ramirez CL, Joung JK, Langenau DM

Improved Somatic Mutagenesis in Zebrafish Using Transcription Activator-Like Effector Nucleases (TALENs).
PLoS One. 2012;7(5):e37877 - PMID: 22655075 - PMCID: PMC3360007 - DOI: 10.1371/journal.pone.0037877

Niu Y, Sheen J

Transient expression assays for quantifying signaling output.
Methods Mol Biol. 2012;876:195-206 - PMID: 22576097 - DOI: 10.1007/978-1-61779-809-2_16

Stanley SA, Schmidt Grant S, Kawate T, Iwase N, Shimizu M, Wivagg C, Silvis M, Kazyanskaya E, Aquadro J, Golas A, Fitzgerald M, Dai H, Zhang L, Hung DT

Identification of novel inhibitors of M. tuberculosis growth using whole cell based high-throughput screening.
ACS Chem Biol. 2012;7(8):1377-84 - PMID: 22577943 - PMCID: PMC3560293 - DOI: 10.1021/cb300151m

Lacy-Hulbert A, Stuart LM

Penetration Resistance: PKR's Other Talent.
Immunity. 2012;36(5):695-6 - PMID: 22633454 - DOI: 10.1016/j.immuni.2012.05.010

Hofmann FT, Szostak JW, Seebeck FP

In vitro selection of functional lantipeptides.
J Am Chem Soc. 2012;134(19):8038-41 - PMID: 22545861 - PMCID: PMC3353655 - DOI: 10.1021/ja302082d

Hamrahi VF, Goverman J, Jung W, Wu JC, Fischman AJ, Tompkins RG, Yu YY, Fagan SP, Carter EA

In vivo molecular imaging of murine embryonic stem cells delivered to a burn wound surface via Integra® scaffolding.
J Burn Care Res. 2012;33(2):e49-54 - PMID: 22540138 - PMCID: PMC3311992 - DOI: 10.1097/BCR.0b013e3182331d1c

Zhang C, Montgomery TA, Fischer SE, Garcia SM, Riedel CG, Fahlgren N, Sullivan CM, Carrington JC, Ruvkun G

The Caenorhabditis elegans RDE-10/RDE-11 Complex Regulates RNAi by Promoting Secondary siRNA Amplification.
Curr Biol. 2012;22(10):881-90 - PMID: 22542102 - PMCID: PMC3371361 - DOI: 10.1016/j.cub.2012.04.011

Wählby C, Kamentsky L, Liu ZH, Riklin-Raviv T, Conery AL, O'Rourke EJ, Sokolnicki KL, Visvikis O, Ljosa V, Irazoqui JE, Golland P, Ruvkun G, Ausubel FM, Carpenter AE

An image analysis toolbox for high-throughput C. elegans assays.
Nat Methods. 2012;9(7):714-6 - PMID: 22522656 - PMCID: PMC3433711 - DOI: 10.1038/nmeth.1984

Montgomery TA, Rim YS, Zhang C, Dowen RH, Phillips CM, Fischer SE, Ruvkun G

PIWI Associated siRNAs and piRNAs Specifically Require the Caenorhabditis elegans HEN1 Ortholog henn-1.
PLoS Genet. 2012;8(4):e1002616 - PMID: 22536158 - PMCID: PMC3334881 - DOI: 10.1371/journal.pgen.1002616
Total: 2489