Publications for All Faculty

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Pukkila-Worley R, Feinbaum R, Kirienko NV, Larkins-Ford J, Conery AL, Ausubel FM

Stimulation of Host Immune Defenses by a Small Molecule Protects C. elegans from Bacterial Infection.

PLoS Genet. 2012;8(6):e1002733 - PMID: 22719261 - PMCID: PMC3375230 - DOI: 10.1371/journal.pgen.1002733
Human Microbiome Project Consortium

A framework for human microbiome research.

Nature. 2012;486(7402):215-21 - PMID: 22699610 - PMCID: PMC3377744 - DOI: 10.1038/nature11209
Human Microbiome Project Consortium

Structure, function and diversity of the healthy human microbiome.

Nature. 2012;486(7402):207-14 - PMID: 22699609 - PMCID: PMC3564958 - DOI: 10.1038/nature11234
Cade L, Reyon D, Hwang WY, Tsai SQ, Patel S, Khayter C, Joung JK, Sander JD, Peterson RT, Yeh JR

Highly efficient generation of heritable zebrafish gene mutations using homo- and heterodimeric TALENs.

Nucleic Acids Res. 2012;40(16):8001-10 - PMID: 22684503 - PMCID: PMC3439908 - DOI: 10.1093/nar/gks518
Zhu TF, Adamala K, Zhang N, Szostak JW

Photochemically driven redox chemistry induces protocell membrane pearling and division.

Proc Natl Acad Sci U S A. 2012;109(25):9828-32 - PMID: 22665773 - PMCID: PMC3382484 - DOI: 10.1073/pnas.1203212109
Murad MH, Drake MT, Mullan RJ, Mauck KF, Stuart LM, Lane MA, Abu Elnour NO, Erwin PJ, Hazem A, Puhan MA, Li T, Montori VM

Clinical review. Comparative effectiveness of drug treatments to prevent fragility fractures: a systematic review and network meta-analysis.

J Clin Endocrinol Metab. 2012;97(6):1871-80 - PMID: 22466336 - DOI: 10.1210/jc.2011-3060
Hwang I., Sheen J., Mueller B.

Cytokinin signaling networks

Annu Rev Plant Biology. . 2012;63:353-380
Sheen J

An interview with Jen Sheen.

Trends Plant Sci. 2012;17(6):321-2 - PMID: 22860262 - DOI: 10.1016/j.tplants.2012.03.006
Moore FE, Reyon D, Sander JD, Martinez SA, Blackburn JS, Khayter C, Ramirez CL, Joung JK, Langenau DM

Improved Somatic Mutagenesis in Zebrafish Using Transcription Activator-Like Effector Nucleases (TALENs).

PLoS One. 2012;7(5):e37877 - PMID: 22655075 - PMCID: PMC3360007 - DOI: 10.1371/journal.pone.0037877
Niu Y, Sheen J

Transient expression assays for quantifying signaling output.

Methods Mol Biol. 2012;876:195-206 - PMID: 22576097 - DOI: 10.1007/978-1-61779-809-2_16
Stanley SA, Schmidt Grant S, Kawate T, Iwase N, Shimizu M, Wivagg C, Silvis M, Kazyanskaya E, Aquadro J, Golas A, Fitzgerald M, Dai H, Zhang L, Hung DT

Identification of novel inhibitors of M. tuberculosis growth using whole cell based high-throughput screening.

ACS Chem Biol. 2012;7(8):1377-84 - PMID: 22577943 - PMCID: PMC3560293 - DOI: 10.1021/cb300151m
Lacy-Hulbert A, Stuart LM

Penetration Resistance: PKR's Other Talent.

Immunity. 2012;36(5):695-6 - PMID: 22633454 - DOI: 10.1016/j.immuni.2012.05.010
Hofmann FT, Szostak JW, Seebeck FP

In vitro selection of functional lantipeptides.

J Am Chem Soc. 2012;134(19):8038-41 - PMID: 22545861 - PMCID: PMC3353655 - DOI: 10.1021/ja302082d
Hamrahi VF, Goverman J, Jung W, Wu JC, Fischman AJ, Tompkins RG, Yu YY, Fagan SP, Carter EA

In vivo molecular imaging of murine embryonic stem cells delivered to a burn wound surface via Integra® scaffolding.

J Burn Care Res. 2012;33(2):e49-54 - PMID: 22540138 - PMCID: PMC3311992 - DOI: 10.1097/BCR.0b013e3182331d1c
Zhang C, Montgomery TA, Fischer SE, Garcia SM, Riedel CG, Fahlgren N, Sullivan CM, Carrington JC, Ruvkun G

The Caenorhabditis elegans RDE-10/RDE-11 Complex Regulates RNAi by Promoting Secondary siRNA Amplification.

Curr Biol. 2012;22(10):881-90 - PMID: 22542102 - PMCID: PMC3371361 - DOI: 10.1016/j.cub.2012.04.011
Wählby C, Kamentsky L, Liu ZH, Riklin-Raviv T, Conery AL, O'Rourke EJ, Sokolnicki KL, Visvikis O, Ljosa V, Irazoqui JE, Golland P, Ruvkun G, Ausubel FM, Carpenter AE

An image analysis toolbox for high-throughput C. elegans assays.

Nat Methods. 2012;9(7):714-6 - PMID: 22522656 - PMCID: PMC3433711 - DOI: 10.1038/nmeth.1984
Montgomery TA, Rim YS, Zhang C, Dowen RH, Phillips CM, Fischer SE, Ruvkun G

PIWI Associated siRNAs and piRNAs Specifically Require the Caenorhabditis elegans HEN1 Ortholog henn-1.

PLoS Genet. 2012;8(4):e1002616 - PMID: 22536158 - PMCID: PMC3334881 - DOI: 10.1371/journal.pgen.1002616
Liu X, Nielsen GP, Rosenberg AE, Waterman PR, Yang W, Choy E, Sassi S, Yang S, Harmon DC, Yang C, Schwab JH, Kobayashi E, Mankin HJ, Xavier R, Weissleder R, Duan Z, Hornicek FJ

Establishment and characterization of a novel chordoma cell line: CH22.

J Orthop Res. 2012;30(10):1666-73 - PMID: 22504929 - DOI: 10.1002/jor.22113
Reyon D, Tsai SQ, Khayter C, Foden JA, Sander JD, Joung JK

FLASH assembly of TALENs for high-throughput genome editing.

Nat Biotechnol. 2012;30(5):460-5 - PMID: 22484455 - PMCID: PMC3558947 - DOI: 10.1038/nbt.2170
Etzrodt M, Cortez-Retamozo V, Newton A, Zhao J, Ng A, Wildgruber M, Romero P, Wurdinger T, Xavier R, Geissmann F, Meylan E, Nahrendorf M, Swirski FK, Baltimore D, Weissleder R, Pittet MJ

Regulation of monocyte functional heterogeneity by miR-146a and Relb.

Cell Rep. 2012;1(4):317-324 - PMID: 22545247 - PMCID: PMC3334310 - DOI: 10.1016/j.celrep.2012.02.009
Barczak AK, Gomez JE, Kaufmann BB, Hinson ER, Cosimi L, Borowsky ML, Onderdonk AB, Stanley SA, Kaur D, Bryant KF, Knipe DM, Sloutsky A, Hung DT

RNA signatures allow rapid identification of pathogens and antibiotic susceptibilities.

Proc Natl Acad Sci U S A. 2012;109(16):6217-22 - PMID: 22474362 - PMCID: PMC3341018 - DOI: 10.1073/pnas.1119540109
Morell E, Wolfe J, Scheurer M, Thiagarajan R, Morin C, Beke DM, Smoot L, Cheng H, Gauvreau K, Blume ED

Patterns of Care at End of Life in Children With Advanced Heart Disease.

Arch Pediatr Adolesc Med. 2012;166(8):745-8 - PMID: 22473887 - PMCID: PMC4119813 - DOI: 10.1001/archpediatrics.2011.1829
Melo JA, Ruvkun G

Inactivation of Conserved C. elegans Genes Engages Pathogen- and Xenobiotic-Associated Defenses.

Cell. 2012;149(2):452-66 - PMID: 22500807 - PMCID: PMC3613046 - DOI: 10.1016/j.cell.2012.02.050
McEwan DL, Kirienko NV, Ausubel FM

Host Translational Inhibition by Pseudomonas aeruginosa Exotoxin A Triggers an Immune Response in Caenorhabditis elegans.

Cell Host Microbe. 2012;11(4):364-74 - PMID: 22520464 - PMCID: PMC3334877 - DOI: 10.1016/j.chom.2012.02.007
Kuballa P, Nolte WM, Castoreno AB, Xavier RJ

Autophagy and the immune system.

Annu Rev Immunol. 2012;30:611-46 - PMID: 22449030 - DOI: 10.1146/annurev-immunol-020711-074948
Total: 2481