Publications for All Faculty

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Carter EA, Paul KW, Barrow SA, Fischman AJ, Tompkins RG

Previous burn injury predisposes mice to lipopolysaccharide-induced changes in glucose metabolism.
J Burn Care Res. 2012;33(5):683-9 - PMID: 22961012 - PMCID: PMC3441057 - DOI: 10.1097/BCR.0b013e31825d6a86

Best SR, Friedman AD, Landau-Zemer T, Barbu AM, Burns JA, Freeman MW, Halvorsen YD, Hillman RE, Zeitels SM

Safety and dosing of bevacizumab (avastin) for the treatment of recurrent respiratory papillomatosis.
Ann Otol Rhinol Laryngol. 2012;121(9):587-93 - PMID: 23012897 - DOI: 10.1177/000348941212100905

Lee H, Khatri A, Plotnikov JM, Zhang XC, Sheen J

Complexity in Differential Peptide-Receptor Signaling: Response to Segonzac et al. and Mueller et al. Commentaries.
Plant Cell. 2012;24(8):3177-85 - PMID: 22923676 - PMCID: PMC3462623 - DOI: 10.1105/tpc.112.099259

Danna CH, Zhang XC, Khatri A, Bent AF, Ronald PC, Ausubel FM

FLS2-Mediated Responses to Ax21-Derived Peptides: Response to the Mueller et al. Commentary.
Plant Cell. 2012;24(8):3174-6 - PMID: 22923675 - PMCID: PMC3462622 - DOI: 10.1105/tpc.112.099275

Conway KL, Goel G, Sokol H, Manocha M, Mizoguchi E, Terhorst C, Bhan AK, Gardet A, Xavier RJ

p40phox Expression Regulates Neutrophil Recruitment and Function during the Resolution Phase of Intestinal Inflammation.
J Immunol. 2012;189(7):3631-40 - PMID: 22914050 - PMCID: PMC3780969 - DOI: 10.4049/jimmunol.1103746

Powner MW, Zheng SL, Szostak JW

Multicomponent assembly of proposed DNA precursors in water.
J Am Chem Soc. 2012;134(33):13889-95 - PMID: 22839703 - PMCID: PMC3424849 - DOI: 10.1021/ja306176n

Cho JL, Roche MI, Sandall B, Brass AL, Seed B, Xavier RJ, Medoff BD

Enhanced Tim3 Activity Improves Survival after Influenza Infection.
J Immunol. 2012;189(6):2879-89 - PMID: 22875804 - PMCID: PMC3436990 - DOI: 10.4049/jimmunol.1102483

Cho JL, Roche MI, Sandall B, Brass AL, Seed B, Xavier RJ, Medoff BD

Enhanced Tim3 activity improves survival after influenza infection.
J Immunol. 2012;189(6):2879-89 - PMID: 22875804 - PMCID: PMC3436990 - DOI: 10.4049/jimmunol.1102483

Zhang C, Ruvkun G

New insights into siRNA amplification and RNAi.
RNA Biol. 2012;9(8):1045-9 - PMID: 22858672 - PMCID: PMC3551858 - DOI: 10.4161/rna.21246

Khalil AS, Lu TK, Bashor CJ, Ramirez CL, Pyenson NC, Joung JK, Collins JJ

A synthetic biology framework for programming eukaryotic transcription functions.
Cell. 2012;150(3):647-58 - PMID: 22863014 - PMCID: PMC3653585 - DOI: 10.1016/j.cell.2012.05.045

Quintin J, Saeed S, Martens JH, Giamarellos-Bourboulis EJ, Ifrim DC, Logie C, Jacobs L, Jansen T, Kullberg BJ, Wijmenga C, Joosten LA, Xavier RJ, van der Meer JW, Stunnenberg HG, Netea MG

Candida albicans Infection Affords Protection against Reinfection via Functional Reprogramming of Monocytes.
Cell Host Microbe. 2012;12(2):223-32 - PMID: 22901542 - PMCID: PMC3864037 - DOI: 10.1016/j.chom.2012.06.006

Powner MW, Zheng SL, Szostak JW

Multicomponent assembly of proposed DNA precursors in water.
J Am Chem Soc. 2012;134(33):13889-95 - PMID: 22839703 - PMCID: PMC3424849 - DOI: 10.1021/ja306176n

Hamrahi V, Hamblin MR, Jung W, Benjamin JB, Paul KW, Fischman AJ, Tompkins RG, Carter EA

Gram-Negative Bacterial Infection in Thigh Abscess Can Migrate to Distant Burn Depending on Burn Depth.
Interdiscip Perspect Infect Dis. 2012;2012:567140 - PMID: 22899912 - PMCID: PMC3412104 - DOI: 10.1155/2012/567140

Feinbaum RL, Urbach JM, Liberati NT, Djonovic S, Adonizio A, Carvunis AR, Ausubel FM

Genome-Wide Identification of Pseudomonas aeruginosa Virulence-Related Genes Using a Caenorhabditis elegans Infection Model.
PLoS Pathog. 2012;8(7):e1002813 - PMID: 22911607 - PMCID: PMC3406104 - DOI: 10.1371/journal.ppat.1002813

Whiteman NK, Gloss AD, Sackton TB, Groen SC, Humphrey PT, Lapoint RT, Sønderby IE, Halkier BA, Kocks C, Ausubel FM, Pierce NE

Genes Involved in the Evolution of Herbivory By A Leaf-Mining, Drosophilid Fly.
Genome Biol Evol. 2012;4(9):900-16 - PMID: 22813779 - PMCID: PMC3516228 - DOI: 10.1093/gbe/evs063

Rathinam VA, Vanaja SK, Waggoner L, Sokolovska A, Becker C, Stuart LM, Leong JM, Fitzgerald KA

TRIF Licenses Caspase-11-Dependent NLRP3 Inflammasome Activation by Gram-Negative Bacteria.
Cell. 2012;150(3):606-19 - PMID: 22819539 - PMCID: PMC3660860 - DOI: 10.1016/j.cell.2012.07.007

Shore DE, Carr CE, Ruvkun G

Induction of cytoprotective pathways is central to the extension of lifespan conferred by multiple longevity pathways.
PLoS Genet. 2012;8(7):e1002792 - PMID: 22829775 - PMCID: PMC3400582 - DOI: 10.1371/journal.pgen.1002792

Schmidt Grant S, Kaufmann BB, Chand NS, Haseley N, Hung DT

Eradication of bacterial persisters with antibiotic-generated hydroxyl radicals.
Proc Natl Acad Sci U S A. 2012;109(30):12147-52 - PMID: 22778419 - PMCID: PMC3409745 - DOI: 10.1073/pnas.1203735109

Luhachack LG, Visvikis O, Wollenberg AC, Lacy-Hulbert A, Stuart LM, Irazoqui JE

EGL-9 Controls C. elegans Host Defense Specificity through Prolyl Hydroxylation-Dependent and -Independent HIF-1 Pathways.
PLoS Pathog. 2012;8(7):e1002798 - PMID: 22792069 - PMCID: PMC3390412 - DOI: 10.1371/journal.ppat.1002798

Yao Y, Danna CH, Ausubel FM, Kovalchuk I

Perception of volatiles produced by UVC-irradiated plants alters the response to viral infection in naïve neighboring plants.
Plant Signal Behav. 2012;7(7):741-5 - PMID: 22751319 - PMCID: PMC3583953 - DOI: 10.4161/psb.20406

Xavier RJ, Gala MK, Bronzo BK, Kelly PJ

Case 23-2012.
N Engl J Med. 2012;367(4):363-73 - PMID: 22830467 - DOI: 10.1056/NEJMcpc1109275

Papa E, Docktor M, Smillie C, Weber S, Preheim SP, Gevers D, Giannoukos G, Ciulla D, Tabbaa D, Ingram J, Schauer DB, Ward DV, Korzenik JR, Xavier RJ, Bousvaros A, Alm EJ

Non-invasive mapping of the gastrointestinal microbiota identifies children with inflammatory bowel disease.
PLoS One. 2012;7(6):e39242 - PMID: 22768065 - PMCID: PMC3387146 - DOI: 10.1371/journal.pone.0039242

Papa E, Docktor M, Smillie C, Weber S, Preheim SP, Gevers D, Giannoukos G, Ciulla D, Tabbaa D, Ingram J, Schauer DB, Ward DV, Korzenik JR, Xavier RJ, Bousvaros A, Alm EJ

Non-invasive mapping of the gastrointestinal microbiota identifies children with inflammatory bowel disease.
PLoS One. 2012;7(6):e39242 - PMID: 22768065 - PMCID: PMC3387146 - DOI: 10.1371/journal.pone.0039242

Su CW, Cao Y, Zhang M, Kaplan J, Su L, Fu Y, Walker WA, Xavier R, Cherayil BJ, Shi HN

Helminth Infection Impairs Autophagy-Mediated Killing of Bacterial Enteropathogens by Macrophages.
J Immunol. 2012;189(3):1459-66 - PMID: 22732589 - PMCID: PMC3423331 - DOI: 10.4049/jimmunol.1200484

Phillips CM, Montgomery TA, Breen PC, Ruvkun G

MUT-16 promotes formation of perinuclear Mutator foci required for RNA silencing in the C. elegans germline.
Genes Dev. 2012;26(13):1433-44 - PMID: 22713602 - PMCID: PMC3403012 - DOI: 10.1101/gad.193904.112
Total: 2481