Publications for All Faculty

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Powner MW, Zheng SL, Szostak JW

Multicomponent assembly of proposed DNA precursors in water.

J Am Chem Soc. 2012;134(33):13889-95 - PMID: 22839703 - PMCID: PMC3424849 - DOI: 10.1021/ja306176n
Hamrahi V, Hamblin MR, Jung W, Benjamin JB, Paul KW, Fischman AJ, Tompkins RG, Carter EA

Gram-Negative Bacterial Infection in Thigh Abscess Can Migrate to Distant Burn Depending on Burn Depth.

Interdiscip Perspect Infect Dis. 2012;2012:567140 - PMID: 22899912 - PMCID: PMC3412104 - DOI: 10.1155/2012/567140
Feinbaum RL, Urbach JM, Liberati NT, Djonovic S, Adonizio A, Carvunis AR, Ausubel FM

Genome-Wide Identification of Pseudomonas aeruginosa Virulence-Related Genes Using a Caenorhabditis elegans Infection Model.

PLoS Pathog. 2012;8(7):e1002813 - PMID: 22911607 - PMCID: PMC3406104 - DOI: 10.1371/journal.ppat.1002813
Whiteman NK, Gloss AD, Sackton TB, Groen SC, Humphrey PT, Lapoint RT, Sønderby IE, Halkier BA, Kocks C, Ausubel FM, Pierce NE

Genes Involved in the Evolution of Herbivory By A Leaf-Mining, Drosophilid Fly.

Genome Biol Evol. 2012;4(9):900-16 - PMID: 22813779 - PMCID: PMC3516228 - DOI: 10.1093/gbe/evs063
Rathinam VA, Vanaja SK, Waggoner L, Sokolovska A, Becker C, Stuart LM, Leong JM, Fitzgerald KA

TRIF Licenses Caspase-11-Dependent NLRP3 Inflammasome Activation by Gram-Negative Bacteria.

Cell. 2012;150(3):606-19 - PMID: 22819539 - PMCID: PMC3660860 - DOI: 10.1016/j.cell.2012.07.007
Shore DE, Carr CE, Ruvkun G

Induction of cytoprotective pathways is central to the extension of lifespan conferred by multiple longevity pathways.

PLoS Genet. 2012;8(7):e1002792 - PMID: 22829775 - PMCID: PMC3400582 - DOI: 10.1371/journal.pgen.1002792
Schmidt Grant S, Kaufmann BB, Chand NS, Haseley N, Hung DT

Eradication of bacterial persisters with antibiotic-generated hydroxyl radicals.

Proc Natl Acad Sci U S A. 2012;109(30):12147-52 - PMID: 22778419 - PMCID: PMC3409745 - DOI: 10.1073/pnas.1203735109
Luhachack LG, Visvikis O, Wollenberg AC, Lacy-Hulbert A, Stuart LM, Irazoqui JE

EGL-9 Controls C. elegans Host Defense Specificity through Prolyl Hydroxylation-Dependent and -Independent HIF-1 Pathways.

PLoS Pathog. 2012;8(7):e1002798 - PMID: 22792069 - PMCID: PMC3390412 - DOI: 10.1371/journal.ppat.1002798
Yao Y, Danna CH, Ausubel FM, Kovalchuk I

Perception of volatiles produced by UVC-irradiated plants alters the response to viral infection in naïve neighboring plants.

Plant Signal Behav. 2012;7(7):741-5 - PMID: 22751319 - PMCID: PMC3583953 - DOI: 10.4161/psb.20406
Xavier RJ, Gala MK, Bronzo BK, Kelly PJ

Case 23-2012.

N Engl J Med. 2012;367(4):363-73 - PMID: 22830467 - DOI: 10.1056/NEJMcpc1109275
Papa E, Docktor M, Smillie C, Weber S, Preheim SP, Gevers D, Giannoukos G, Ciulla D, Tabbaa D, Ingram J, Schauer DB, Ward DV, Korzenik JR, Xavier RJ, Bousvaros A, Alm EJ

Non-invasive mapping of the gastrointestinal microbiota identifies children with inflammatory bowel disease.

PLoS One. 2012;7(6):e39242 - PMID: 22768065 - PMCID: PMC3387146 - DOI: 10.1371/journal.pone.0039242
Papa E, Docktor M, Smillie C, Weber S, Preheim SP, Gevers D, Giannoukos G, Ciulla D, Tabbaa D, Ingram J, Schauer DB, Ward DV, Korzenik JR, Xavier RJ, Bousvaros A, Alm EJ

Non-invasive mapping of the gastrointestinal microbiota identifies children with inflammatory bowel disease.

PLoS One. 2012;7(6):e39242 - PMID: 22768065 - PMCID: PMC3387146 - DOI: 10.1371/journal.pone.0039242
Su CW, Cao Y, Zhang M, Kaplan J, Su L, Fu Y, Walker WA, Xavier R, Cherayil BJ, Shi HN

Helminth Infection Impairs Autophagy-Mediated Killing of Bacterial Enteropathogens by Macrophages.

J Immunol. 2012;189(3):1459-66 - PMID: 22732589 - PMCID: PMC3423331 - DOI: 10.4049/jimmunol.1200484
Phillips CM, Montgomery TA, Breen PC, Ruvkun G

MUT-16 promotes formation of perinuclear Mutator foci required for RNA silencing in the C. elegans germline.

Genes Dev. 2012;26(13):1433-44 - PMID: 22713602 - PMCID: PMC3403012 - DOI: 10.1101/gad.193904.112
Pukkila-Worley R, Feinbaum R, Kirienko NV, Larkins-Ford J, Conery AL, Ausubel FM

Stimulation of Host Immune Defenses by a Small Molecule Protects C. elegans from Bacterial Infection.

PLoS Genet. 2012;8(6):e1002733 - PMID: 22719261 - PMCID: PMC3375230 - DOI: 10.1371/journal.pgen.1002733
Human Microbiome Project Consortium

A framework for human microbiome research.

Nature. 2012;486(7402):215-21 - PMID: 22699610 - PMCID: PMC3377744 - DOI: 10.1038/nature11209
Human Microbiome Project Consortium

Structure, function and diversity of the healthy human microbiome.

Nature. 2012;486(7402):207-14 - PMID: 22699609 - PMCID: PMC3564958 - DOI: 10.1038/nature11234
Cade L, Reyon D, Hwang WY, Tsai SQ, Patel S, Khayter C, Joung JK, Sander JD, Peterson RT, Yeh JR

Highly efficient generation of heritable zebrafish gene mutations using homo- and heterodimeric TALENs.

Nucleic Acids Res. 2012;40(16):8001-10 - PMID: 22684503 - PMCID: PMC3439908 - DOI: 10.1093/nar/gks518
Zhu TF, Adamala K, Zhang N, Szostak JW

Photochemically driven redox chemistry induces protocell membrane pearling and division.

Proc Natl Acad Sci U S A. 2012;109(25):9828-32 - PMID: 22665773 - PMCID: PMC3382484 - DOI: 10.1073/pnas.1203212109
Murad MH, Drake MT, Mullan RJ, Mauck KF, Stuart LM, Lane MA, Abu Elnour NO, Erwin PJ, Hazem A, Puhan MA, Li T, Montori VM

Clinical review. Comparative effectiveness of drug treatments to prevent fragility fractures: a systematic review and network meta-analysis.

J Clin Endocrinol Metab. 2012;97(6):1871-80 - PMID: 22466336 - DOI: 10.1210/jc.2011-3060
Hwang I., Sheen J., Mueller B.

Cytokinin signaling networks

Annu Rev Plant Biology. . 2012;63:353-380
Sheen J

An interview with Jen Sheen.

Trends Plant Sci. 2012;17(6):321-2 - PMID: 22860262 - DOI: 10.1016/j.tplants.2012.03.006
Moore FE, Reyon D, Sander JD, Martinez SA, Blackburn JS, Khayter C, Ramirez CL, Joung JK, Langenau DM

Improved Somatic Mutagenesis in Zebrafish Using Transcription Activator-Like Effector Nucleases (TALENs).

PLoS One. 2012;7(5):e37877 - PMID: 22655075 - PMCID: PMC3360007 - DOI: 10.1371/journal.pone.0037877
Niu Y, Sheen J

Transient expression assays for quantifying signaling output.

Methods Mol Biol. 2012;876:195-206 - PMID: 22576097 - DOI: 10.1007/978-1-61779-809-2_16
Stanley SA, Schmidt Grant S, Kawate T, Iwase N, Shimizu M, Wivagg C, Silvis M, Kazyanskaya E, Aquadro J, Golas A, Fitzgerald M, Dai H, Zhang L, Hung DT

Identification of novel inhibitors of M. tuberculosis growth using whole cell based high-throughput screening.

ACS Chem Biol. 2012;7(8):1377-84 - PMID: 22577943 - PMCID: PMC3560293 - DOI: 10.1021/cb300151m
Total: 2470