Publications for All Faculty

Sort by:

Morgan XC, Tickle TL, Sokol H, Gevers D, Devaney KL, Ward DV, Reyes JA, Shah SA, Leleiko N, Snapper SB, Bousvaros A, Korzenik J, Sands BE, Xavier RJ, Huttenhower C

Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment.
Genome Biol. 2012;13(9):R79 - PMID: 23013615 - PMCID: PMC3506950 - DOI: 10.1186/gb-2012-13-9-r79

Kleinnijenhuis J, Quintin J, Preijers F, Joosten LA, Ifrim DC, Saeed S, Jacobs C, van Loenhout J, de Jong D, Stunnenberg HG, Xavier RJ, van der Meer JW, van Crevel R, Netea MG

Bacille Calmette-Guerin induces NOD2-dependent nonspecific protection from reinfection via epigenetic reprogramming of monocytes.
Proc Natl Acad Sci U S A. 2012;109(43):17537-42 - PMID: 22988082 - PMCID: PMC3491454 - DOI: 10.1073/pnas.1202870109

Maloney NS, Thackray LB, Goel G, Hwang S, Duan E, Vachharajani P, Xavier R, Virgin HW

Essential cell autonomous role for interferon regulatory factor 1 in interferon-?-mediated inhibition of norovirus replication in macrophages.
J Virol. 2012;86(23):12655-64 - PMID: 22973039 - PMCID: PMC3497668 - DOI: 10.1128/JVI.01564-12

Boudsocq M, Sheen J

CDPKs in immune and stress signaling.
Trends Plant Sci. 2013;18(1):30-40 - PMID: 22974587 - PMCID: PMC3534830 - DOI: 10.1016/j.tplants.2012.08.008

Hermann M, Maeder ML, Rector K, Ruiz J, Becher B, Bürki K, Khayter C, Aguzzi A, Joung JK, Buch T, Pelczar P

Evaluation of OPEN Zinc Finger Nucleases for Direct Gene Targeting of the ROSA26 Locus in Mouse Embryos.
PLoS One. 2012;7(9):e41796 - PMID: 22970113 - PMCID: PMC3435328 - DOI: 10.1371/journal.pone.0041796

Carey K, Kazis LE, Lee AF, Liang MH, Li NC, Hinson MI, Lydon MK, Bauk H, Shapiro GD, Tompkins RG,

Measuring the cost of care for children with acute burn injury.
J Trauma Acute Care Surg. 2012;73(3 Suppl 2):S229-33 - PMID: 22929551 - DOI: 10.1097/TA.0b013e318265c88a

Palmieri TL, Nelson-Mooney K, Kagan RJ, Stubbs TK, Meyer WJ, Herndon DN, Hinson MI, Lee AF, Li NC, Kazis LE, Tompkins RG,

Impact of hand burns on health-related quality of life in children younger than 5 years.
J Trauma Acute Care Surg. 2012;73(3 Suppl 2):S197-204 - PMID: 22929547 - DOI: 10.1097/TA.0b013e318265c7ff

Tompkins RG, Liang MH, Lee AF, Kazis LE,

The American Burn Association/Shriners Hospitals for Children Burn Outcomes Program: A progress report at 15 years.
J Trauma Acute Care Surg. 2012;73(3 Suppl 2):S173-8 - PMID: 22929544 - DOI: 10.1097/TA.0b013e318265c53e

Carter EA, Paul KW, Barrow SA, Fischman AJ, Tompkins RG

Previous burn injury predisposes mice to lipopolysaccharide-induced changes in glucose metabolism.
J Burn Care Res. 2012;33(5):683-9 - PMID: 22961012 - PMCID: PMC3441057 - DOI: 10.1097/BCR.0b013e31825d6a86

Best SR, Friedman AD, Landau-Zemer T, Barbu AM, Burns JA, Freeman MW, Halvorsen YD, Hillman RE, Zeitels SM

Safety and dosing of bevacizumab (avastin) for the treatment of recurrent respiratory papillomatosis.
Ann Otol Rhinol Laryngol. 2012;121(9):587-93 - PMID: 23012897 - DOI: 10.1177/000348941212100905

Lee H, Khatri A, Plotnikov JM, Zhang XC, Sheen J

Complexity in Differential Peptide-Receptor Signaling: Response to Segonzac et al. and Mueller et al. Commentaries.
Plant Cell. 2012;24(8):3177-85 - PMID: 22923676 - PMCID: PMC3462623 - DOI: 10.1105/tpc.112.099259

Danna CH, Zhang XC, Khatri A, Bent AF, Ronald PC, Ausubel FM

FLS2-Mediated Responses to Ax21-Derived Peptides: Response to the Mueller et al. Commentary.
Plant Cell. 2012;24(8):3174-6 - PMID: 22923675 - PMCID: PMC3462622 - DOI: 10.1105/tpc.112.099275

Conway KL, Goel G, Sokol H, Manocha M, Mizoguchi E, Terhorst C, Bhan AK, Gardet A, Xavier RJ

p40phox Expression Regulates Neutrophil Recruitment and Function during the Resolution Phase of Intestinal Inflammation.
J Immunol. 2012;189(7):3631-40 - PMID: 22914050 - PMCID: PMC3780969 - DOI: 10.4049/jimmunol.1103746

Powner MW, Zheng SL, Szostak JW

Multicomponent assembly of proposed DNA precursors in water.
J Am Chem Soc. 2012;134(33):13889-95 - PMID: 22839703 - PMCID: PMC3424849 - DOI: 10.1021/ja306176n

Cho JL, Roche MI, Sandall B, Brass AL, Seed B, Xavier RJ, Medoff BD

Enhanced Tim3 Activity Improves Survival after Influenza Infection.
J Immunol. 2012;189(6):2879-89 - PMID: 22875804 - PMCID: PMC3436990 - DOI: 10.4049/jimmunol.1102483

Cho JL, Roche MI, Sandall B, Brass AL, Seed B, Xavier RJ, Medoff BD

Enhanced Tim3 activity improves survival after influenza infection.
J Immunol. 2012;189(6):2879-89 - PMID: 22875804 - PMCID: PMC3436990 - DOI: 10.4049/jimmunol.1102483

Zhang C, Ruvkun G

New insights into siRNA amplification and RNAi.
RNA Biol. 2012;9(8):1045-9 - PMID: 22858672 - PMCID: PMC3551858 - DOI: 10.4161/rna.21246

Khalil AS, Lu TK, Bashor CJ, Ramirez CL, Pyenson NC, Joung JK, Collins JJ

A synthetic biology framework for programming eukaryotic transcription functions.
Cell. 2012;150(3):647-58 - PMID: 22863014 - PMCID: PMC3653585 - DOI: 10.1016/j.cell.2012.05.045

Quintin J, Saeed S, Martens JH, Giamarellos-Bourboulis EJ, Ifrim DC, Logie C, Jacobs L, Jansen T, Kullberg BJ, Wijmenga C, Joosten LA, Xavier RJ, van der Meer JW, Stunnenberg HG, Netea MG

Candida albicans Infection Affords Protection against Reinfection via Functional Reprogramming of Monocytes.
Cell Host Microbe. 2012;12(2):223-32 - PMID: 22901542 - PMCID: PMC3864037 - DOI: 10.1016/j.chom.2012.06.006

Powner MW, Zheng SL, Szostak JW

Multicomponent assembly of proposed DNA precursors in water.
J Am Chem Soc. 2012;134(33):13889-95 - PMID: 22839703 - PMCID: PMC3424849 - DOI: 10.1021/ja306176n

Hamrahi V, Hamblin MR, Jung W, Benjamin JB, Paul KW, Fischman AJ, Tompkins RG, Carter EA

Gram-Negative Bacterial Infection in Thigh Abscess Can Migrate to Distant Burn Depending on Burn Depth.
Interdiscip Perspect Infect Dis. 2012;2012:567140 - PMID: 22899912 - PMCID: PMC3412104 - DOI: 10.1155/2012/567140

Feinbaum RL, Urbach JM, Liberati NT, Djonovic S, Adonizio A, Carvunis AR, Ausubel FM

Genome-Wide Identification of Pseudomonas aeruginosa Virulence-Related Genes Using a Caenorhabditis elegans Infection Model.
PLoS Pathog. 2012;8(7):e1002813 - PMID: 22911607 - PMCID: PMC3406104 - DOI: 10.1371/journal.ppat.1002813

Whiteman NK, Gloss AD, Sackton TB, Groen SC, Humphrey PT, Lapoint RT, Sønderby IE, Halkier BA, Kocks C, Ausubel FM, Pierce NE

Genes Involved in the Evolution of Herbivory By A Leaf-Mining, Drosophilid Fly.
Genome Biol Evol. 2012;4(9):900-16 - PMID: 22813779 - PMCID: PMC3516228 - DOI: 10.1093/gbe/evs063

Rathinam VA, Vanaja SK, Waggoner L, Sokolovska A, Becker C, Stuart LM, Leong JM, Fitzgerald KA

TRIF Licenses Caspase-11-Dependent NLRP3 Inflammasome Activation by Gram-Negative Bacteria.
Cell. 2012;150(3):606-19 - PMID: 22819539 - PMCID: PMC3660860 - DOI: 10.1016/j.cell.2012.07.007

Shore DE, Carr CE, Ruvkun G

Induction of cytoprotective pathways is central to the extension of lifespan conferred by multiple longevity pathways.
PLoS Genet. 2012;8(7):e1002792 - PMID: 22829775 - PMCID: PMC3400582 - DOI: 10.1371/journal.pgen.1002792
Total: 2489