WELCOME TO THE CENTER FOR
COMPUTATIONAL AND INTEGRATIVE BIOLOGY

The Center for Computational and Integrative Biology is an affiliation of faculty drawn together by a common interest in the study of biology through methods engaging a broader scale of inquiry than the existing standard of the era. The faculty collectively has highly diverse interests, ranging from inquiries into the origins of life, the mechanisms of host-pathogen interactions in plants and model organisms, the relationship between atherosclerosis and inflammatory responses in vertebrates, and the collection and analysis of comprehensive measures of physiology in an attempt to understand the harbingers of adverse outcomes (principally sepsis and its sequelae) in individuals treated for trauma.

The Center for Computational and Integrative Biology provides support for investigators at the hospital and across Boston through a variety of autonomous cores that provide services in DNA sequencing, oligonucleotide synthesis, microarray analysis, and research laboratory automation.


The 2009 Nobel Prize in Medicine is awarded to Professor Jack Szostak

Dr. Jack Szostak of the CCIB and the Department of Molecular Biology at Massachusetts General Hospital has been awarded the 2009 Nobel Prize in Physiology or Medicine for his original contributions to our understanding of the processes of life and of disease.

The Royal Swedish Academy of Sciences awarded the prize to Dr. Szostak "for the discovery of how chromosomes are protected by telomeres and the enzyme telomerase". With Elizabeth Blackburn, a professor at the University of California, San Francisco, and Carol Greider, a professor at Johns Hopkins University School of Medicine, he demonstrated the existence of telomeres and predicted the enzyme telomerase.

''The discoveries by Blackburn, Greider and Szostak have added a new dimension to our understanding of the cell, shed light on disease mechanisms, and stimulated the development of potential new therapies,'' the prize committee said in its citation. They solved the mystery of how a chromosome can be copied completely during cell division and remain free of errors during the process. They showed how organisms use telomerase to prevent the genome from degrading during division. His work made possible subsequent studies linking telomerase to cancer and age-related diseases in humans.

Dr. Szostak received the 2008 Heineken Prize and the 2006 Lasker Award for his accomplishments in basic medical research for his work on telomerase. He is a Howard Hughes Medical Institute fellow, the Alexander Rich Distinguished Investigator at Massachusetts General Hospital, and Professor of Genetics at Harvard Medical School. His current research is on the origin of life.

Click here for the announcement on the Nobel Prize website.
Click here for more information on his research on the HHMI website.


Gary Ruvkun Wins the 2008 Lasker Award

Gary Ruvkun, Victor Ambros and David Baulcombe have been announced as the winners of the 2008 Lasker Award for their pioneering work on microRNAs (miRNAs) and their discoveries about how these very small strands of RNA regulate gene activity. MicroRNAs, first found in the tiny roundworm Caenorhabditis elegans and plants, are now believed to control about one-third of all human genes. MicroRNA misregulation appears to play an important role in a variety of human diseases, including cancer, diabetes and cardiac failure. For the full text of the Lasker Foundation Award, see the Lasker web site at: http://www.laskerfoundation.org/awards/2008_b_description.htm.

Gary Ruvkun was also honored earlier this year by the 2008 Gairdner Award for his work with miRNAs. He started his work on miRNAs and their target mRNA genes in 1982, and has since published numerous papers on their role in gene regulation. His papers revealed an unexpected world of RNAs regulating RNAs, which goes against the so called "central dogma" of biology in which RNAs were believed to act only as information transporters.

Dr. Ruvkun was also the recipient of a number of other honors in the past year. In October, he was elected to the Institute of Medicine. In April, the National Academy of Sciences elected him to membership in the Academy at their 145th annual meeting. In addition, he was the recipient of the 2008 Warren Triennial Prize, given by the Massachusetts General Hospital, and of the 2008 Benjamin Franklin Medal in Life Science, awarded by the Franklin Institute each year.


Keith Joung Develops a New Tool for Genomic Research

A multi-institutional team led by Keith Joung of the CCIB has developed a powerful new tool for genomic research: a robust method for generating synthetic enzymes that can target particular DNA sequences for inactivation or repair. In the July 25 issue of Molecular Cell, the researchers describe an efficient method to engineer customized zinc-finger nucleases (ZFNs), which can be used to induce specific genomic modifications in many types of cells.

“Recent work has shown that ZFNs can alter genes with high efficiency in cells from plants or model organisms like fruitflies, roundworms and zebrafish, and in human cells,” says J. Keith Joung, MD, PhD, the paper’s senior author. “However, a significant bottleneck has been the lack of access to an effective method for generating the customized DNA-binding domains needed to guide ZFNs to their target sites. Our method will enable academic researchers to rapidly create high-quality ZFNs for genes of interest and stimulate use of this technology in biological research and gene therapy.”

Zinc-finger peptides occur in many proteins that regulate or otherwise interact with DNA. Current methods for generating ZFNs are either inefficient or involve constructing and analyzing huge libraries of zinc-finger peptides, a task that exceeds the capabilities of all but a handful of laboratories in the world. Click here to link to the press release.



The Center for Computational and Integrative Biology
Massachusetts General Hospital
Richard B. Simches Research Center
185 Cambridge Street, 7th Floor
Boston, MA 02114
Ph: 617.643.3300
Fax: 617.643.3328


CCIB Core Facilities
Massachusetts General Hospital
38 Sidney Street
Suite 100
Cambridge, MA 02139
Ph: 617.726.0069
Fax: 617.726.0077





   



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